| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1534 |
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| Symbol | |
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| ID | 4921355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1760224 |
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| End bp | 1763646 |
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| Gene Length | 3423 bp |
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| Protein Length | 1140 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163096 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001093660 |
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| Protein GI | 127512463 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.254728 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGA CTCTGGTTGT CGGCGTGATC GCCCTGTTAT ACGTGTCGCT ACTCTTCCTG
TTGGCCTGGG GAGCGGAGCG CTGGTTTGGG CGGATCACCA AGAAGATACA GACATGGATT
TATGGTTTAA GTTTAGCGGT TTACTGTTCC TCCTGGAGCT TTCTCGGCAC AGTTGGTCAG
TCGGCGCAGG ATCTCTGGTC TTTCCTGCCT ATCTTCGTCG GCCCCATACT CATCTTTACC
TTCGGCTTCG GTCTGCTGCG CAAGATGGTG ATCGTCTCCA AGGCGCAAAA CATCACGTCG
GTGGCCGACT TTATTGCCGC CCGTTACGGC AAGTCGCAGA CCATCGCCGC CATCGTTACC
CTGATCGCCC TGTTTGGCAT CATGCCCTAT ATCGCTTTGC AGCTTAAGGC CATGGTGTTC
AGCCTCAACC TGTTTCAGCC CGAAGACGCC CAATACGATG GCGCCTGGGT CTCTCTAATT
GTTACCGGCA TACTAGCGAT GTTTGCCATC CTGTTTGGTA CCCGTAAGCT GGATGCGACC
GAGCACAACC CTGGCATGAT GCTGGCGATC GCCTTCGAGT CATTGGTGAA ACTGGCGGCC
TTCCTCTTGG TGGGCTGCGT GATCAGCTTT GGTTTCTTCG ATGGCTTCGG CGATATCTGG
GCCCAGGCCA CCGAGCGTCA GCTGATCAAT AATCCCGAGC TGCGGCTGGA AAACCTGATG
CCCCAGTTGT TGGTGGGCAT GGCGGCGTTT CTCTGCATGC CGCGCCAGTT CCACGTGATG
ATGGTGGAGT GTAAGGATGA ACCCACCTTA GTTAAGGCCA AATACCTGTT TCCCCTCTAT
CTGATCCTGT TTGGTATGTT TGTGGCGCCG CTCGCCCTGG CGGGTAAGCT GATGCTGGGG
GATAGCGTGT CGGCCGATAC CTATGTGATT AATCTGCCGC TGGCGCTGGA TCAGCCCATG
CTGGCAGTGA TCGCCCTGCT TGGGACGCTG TCGGCGGCCA CCGGCATGGT GATCGTTGCC
GTGGTGACCA TCAGCGTCAT GGTGAGCAAC GAGTGGCTGG TGCCTCTGAT GTTGCACTCG
GGCAAGATCC GCCAGAAGAA CTTCAGCCAG TTTTCGCAGT TCCTGCTCAA TGCCCGTCGC
ATCGCCATAG TCCTTATCTT GGGGTTGGGT TATTTCAGTT ACCTCTCCTT CATGAACAGC
GATTCGCTCT CGGCGCTGGG CATGCTCTCC TTCGGCGCCT TTGCCCAGCT CGCGCCTGCG
CTGATTGGTG GCATGTACTG GAAGCACGGC AATCGCGGCG GGGTGTATTT GGGGCTTATC
GTCGGCTTCG GCCTCTGGTG TTACATACTG GTGCAGGGGA TGAGCGACAG TCAGGGGGTG
TTTGGCGGCG AGCTGGCGCT GCTCGACAGT ATCAACCCCA ACATTCGTGA CATTCTCACC
GCGCTGCTGG CAAACCTTGC CTGTTATGTG CTGGGCTCTA TCTGGTTTCG CGCCGGGGTG
GCCGAGCGTA TCCAGGCCAG TGCCTTCGTG ACCCCAGGCG AGCTGAAAAA CACCAGTAAC
CGTAAGGCAT CGCCCATCTC GCAGCAGGAT CTCTTGATCT TGGCCAGTCG CTTCGTGAGC
CCCACGAGAG CCTATGAGAG TTTCTCCCGC TTCTCCGATG AGGCGGTGCG CAGTGACAGC
TGGCACAAGG TGGCCTCGCC GGAACTGATT GCCCACACCG AGCATATGCT TGCCGGGGTG
CTGGGGGGAT CCAGTGCCTC CTTGGTGATG GATTCTGTGC TGCAGGGGCG AGATCTCGCT
CTGGATGAGG TGTTCAGCCT GGTGGATGAG GCCTCATCAA AGATCATCCT CAGCCAGGAT
ATGCTCAGGG GCGCCATAGA GCATGCCTAT GAGGGGATGA GCGTGGTGGA CAAGGAGCTG
AACCTGGTGG CCTGGAACTA CAAGTATGTG GAGCTCTACG ATTATCCCGA AGATTTTCTG
CAGGCCGGCA TGCCTATCGC CGATGTGGTA CGTTTCAATG CCGAGCGCGG CTACTGCGGT
CCCGGGGATG TGGAGGAGCA GGTGGCCAAG CGGGTGCAGC ATATGCGTAA CGGCACCCCA
CATGTATCCG AGCGTGAGCG TCAGGATGGC AAGGTGATCA AGATACAGGG TAATCCTATG
CCCAGCGGCG GTTTTGTGAT GACCTTTACC GACATTACCC AGTACCGCGA GCAGGCCAGA
GCGCTGCAGG AGGTCAACGA AACCCTGGAG GCCAGGGTGA AGGAGCGTAC CTATGAGCTG
GCGCTGCTCA ACAGTCAGCT ACTTGAGGCC AAGGCCCAGG AGGAGATAGC CAACGCCTCC
AAGAGTCGTT TCCTAGCCGC AGTCGGCCAC GACCTGATGC AGCCACTTAA TGCCGCCCGT
CTTTTTACGG CGTCTCTGGC GCAATACCCA AATTTGGATC AGGAGGGGCG CACCACGCTC
TCCCACGTCA ACAGCTCACT CAAAATTGCT GGCGAGCTGC TGACGGATCT ACTGGATATC
TCTAAGCTAG ATTCCGGCAT GGTGGAGGTA AACCGCCGCG ACTTCTCGGT GGCTGAGCTG
CTGGAAGGCT TAGCGGTGGA ATTCGATGCC ATGGCTAAGG ATTACGGCAT CAAGTTTTCC
ATGGTGGCCA GCTCAAGTAT TATCAGCTCA GATCTCAGCC TGCTCAGGCG GGTGCTGCAG
AACTTTCTCA CCAACGCCTA TCGGTATGCC AAGGGCAATC GGGTACTGCT GGGCTGTCGT
CACCGCGCCG GGGCGCTGGA GATCCAGGTG AACGATACCG GCTGCGGCAT CGACGAGCAA
GAGCTCGGTG AGATCTTCAA GGAGTTCAAG CGCCTTGAAA ACCCTGAGAG TAAGAGCGTC
AGCGGTTTAG GCTTAGGGCT AGCCATCGCC GATCGCATCG CCCGCGTGCT GGGTCATGAC
ATTAAGGTGG TTTCCAAGCT AGGGTTGGGC TCGATGTTTT CTATCACAGT GCCGCTTGGG
GAGAAGGCTA AGGTGGCCCT GCCTAAGAAG GCCAATCCTG TTATGCAACC GCTGGCCGGG
GTGAAGGTAC TCTGTATCGA TAACGAAGAG GCGATCCTGG CAGGACTCGA GAGCCTGCTC
AGCCGCTGGC AGTGCGAGGT TATCTGCGCC AGCGATCTCG CCGATGCCCG CATCAAGCTG
GGGCTCAAGG GGGTGGCACC CGATATCGTT CTGGCGGATT ACCATCTGGA TCATGGCCAA
AACGGCGTCG ATGCCATGGA CGGGATCCGT GCCCTCTATG GCGCTCACTT GCCGGGGATC
TTGATCACCG CCAATACCCG TAAAGACTTG GTGGAAGATG TGCAGCAGCG CGGCTATCAC
TACATGGCCA AGATGGTTAA ACCCGCGGCG CTGCGCGCGC TGATATCCAG TTTAGTAAAG
TAA
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| Protein sequence | MNLTLVVGVI ALLYVSLLFL LAWGAERWFG RITKKIQTWI YGLSLAVYCS SWSFLGTVGQ
SAQDLWSFLP IFVGPILIFT FGFGLLRKMV IVSKAQNITS VADFIAARYG KSQTIAAIVT
LIALFGIMPY IALQLKAMVF SLNLFQPEDA QYDGAWVSLI VTGILAMFAI LFGTRKLDAT
EHNPGMMLAI AFESLVKLAA FLLVGCVISF GFFDGFGDIW AQATERQLIN NPELRLENLM
PQLLVGMAAF LCMPRQFHVM MVECKDEPTL VKAKYLFPLY LILFGMFVAP LALAGKLMLG
DSVSADTYVI NLPLALDQPM LAVIALLGTL SAATGMVIVA VVTISVMVSN EWLVPLMLHS
GKIRQKNFSQ FSQFLLNARR IAIVLILGLG YFSYLSFMNS DSLSALGMLS FGAFAQLAPA
LIGGMYWKHG NRGGVYLGLI VGFGLWCYIL VQGMSDSQGV FGGELALLDS INPNIRDILT
ALLANLACYV LGSIWFRAGV AERIQASAFV TPGELKNTSN RKASPISQQD LLILASRFVS
PTRAYESFSR FSDEAVRSDS WHKVASPELI AHTEHMLAGV LGGSSASLVM DSVLQGRDLA
LDEVFSLVDE ASSKIILSQD MLRGAIEHAY EGMSVVDKEL NLVAWNYKYV ELYDYPEDFL
QAGMPIADVV RFNAERGYCG PGDVEEQVAK RVQHMRNGTP HVSERERQDG KVIKIQGNPM
PSGGFVMTFT DITQYREQAR ALQEVNETLE ARVKERTYEL ALLNSQLLEA KAQEEIANAS
KSRFLAAVGH DLMQPLNAAR LFTASLAQYP NLDQEGRTTL SHVNSSLKIA GELLTDLLDI
SKLDSGMVEV NRRDFSVAEL LEGLAVEFDA MAKDYGIKFS MVASSSIISS DLSLLRRVLQ
NFLTNAYRYA KGNRVLLGCR HRAGALEIQV NDTGCGIDEQ ELGEIFKEFK RLENPESKSV
SGLGLGLAIA DRIARVLGHD IKVVSKLGLG SMFSITVPLG EKAKVALPKK ANPVMQPLAG
VKVLCIDNEE AILAGLESLL SRWQCEVICA SDLADARIKL GLKGVAPDIV LADYHLDHGQ
NGVDAMDGIR ALYGAHLPGI LITANTRKDL VEDVQQRGYH YMAKMVKPAA LRALISSLVK
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