| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1529 |
|---|
| Symbol | |
|---|
| ID | 4923265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1752003 |
|---|
| End bp | 1752725 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640163084 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001093655 |
|---|
| Protein GI | 127512458 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR02795] tol-pal system protein YbgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000257088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.395847 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACTG CCGTTGTTAC CGCGGCAATT CTAATGAGTG TTGGCGTCGC AGTAGCGGCG
CCTGCGCCCG TTGAGGATGT TGCCGGTGGT TCCTCCGAAG ATAGAGTTGC GCGCCTTGAG
CGTATCATAA AGGCCAAACA AGCGGCCGAG TTTGAGATGC AACAGCGCCT TGACACCCTC
CAACAGGAGG TACTTGACCT GCGTGGCCTG ACTGAGCAGC AAAGCTATCA GATCAATCAG
ATGCTGCAGC GCCAGCGCCA GCTCTATGAC GATATCGCTA ACCTGAGTAA GGCTAAGTCG
ACACCTGTGG CCGCAACCCC TGTGGCGACC AGTTCAGAGA CCTCTTCTCT GGGAGAAACC
GCCAGCTATG AGCGCGCGGT TAATCTGGTG CTGAAAGAGC GTCAGTACGA TGAGGCGATC
CCGGCGTTTC GTGAGTTCAT CGCACAATAC CCCAACTCGA CCTATGCGGC GAATGCTAAC
TATTGGTTAG GTCAGCTACT CTATAACAAG GGTGAGCTTG CTGAGGCGGG CAAGGCCTTT
AATACTGTGG TGAACCAGTT TAAAGAGTCG AATAAGCGTG GTGATAGTTT GGTTAAACTT
GGCATGATCG CACAGAAGCG TAACGATAAC GCTGCTGCGA AACGTTACTA TCAGCAAGTC
GTTAGCGAAT ATGCCAATAG CGCTGCGGCG CGTATCGCCA AACAGCAGAT GGTGGGGCTT
TAA
|
|---|
| Protein sequence | MKTAVVTAAI LMSVGVAVAA PAPVEDVAGG SSEDRVARLE RIIKAKQAAE FEMQQRLDTL
QQEVLDLRGL TEQQSYQINQ MLQRQRQLYD DIANLSKAKS TPVAATPVAT SSETSSLGET
ASYERAVNLV LKERQYDEAI PAFREFIAQY PNSTYAANAN YWLGQLLYNK GELAEAGKAF
NTVVNQFKES NKRGDSLVKL GMIAQKRNDN AAAKRYYQQV VSEYANSAAA RIAKQQMVGL
|
|---|
| |