Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1527 |
Symbol | tolB |
ID | 4924145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1750081 |
End bp | 1751406 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640163082 |
Product | translocation protein TolB |
Protein accession | YP_001093653 |
Protein GI | 127512456 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000832022 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACT TGGGAAGATG GCTCATCTTG GGGCTGGCAT TTTTAACCAT TCCGGCCAAG GCGGCATTGG ATATAGTGAT CACCGAAGGG GTCGATGCGG CGCGTCCTAT CGCCGTGGTG CCTTTTGTGT GGCAGGGGAG CACACCCATG CCGCAACAGA TCTCTGATGT GGTGATGTCG GATCTGACCC GCAGCGGTAC CTTTAAGCCA ATGGACGAAT TGGGTCTGCC ACAGCGCAAT TTAGGTTCGC TGGCGCAGAT GGATTTGAAG GCCTGGTCGA ATGTGGCCGC CGAAGCTGTG GTCATGGGCA CGGTTAAGCC TTATGGTCCA GATCAATATC TGGTTAATTT CGAGCTTATT GATCTGGTTA AGGCGCAGAT GCAGTCTGGT GGCCCTCAGT CGGCCAGCGA ATATCTGCTC GATAGCCGCG AGACAGTGAT CAGCAGCGCC CAGTTCAGGC AGTATGGTCA CAGAATCAGC GACATCGTCT ATGAGAAGCT TACCGGTATT CGCGGTGCCT TCTTGACCCG CATCGCCTAC GTGGTGGTGG ATCACAAGGC GAAATCACCC TATAAGTTGA TGATTGCCGA TTACGATGGC TATAACGAGC AGATGCTGCT GCGCTCGCCC GAGCCGCTGA TGTCGCCAGC CTGGTCACCG GATGGTCGCC GCTTGGCCTA TGTGAGTTTT GAGAACAAAC AGGCCGAGGT TTTTGTTCAG GATATCTATA CTCAGCAAAG AACCAAGGTG ACCAGCTTTC CTGGCATCAA TGGTGCGCCT ACCTTCTCGC CCGATGGCAA GAAGTTAGCG CTAACCCTGT CGAAAGATGG GCAGCCTGAG ATCTATGTGG CGGATATTGC CACCAAGGCG ATAAAACGTG TTACCAACCA TTATGCCATC GACACCGAGG CCTCATGGAC ACCCGATGGT AAGTCGCTGA TCTTCACCTC AGAGCGTGGT GGTCGTCCGC AGATATATCA GGTGGCATTG GCATCGGGTA AGGTTACACG CTTGACCTTC GAGGGGGAAT GGAACCTGGG CGGCTCTATC TCACCAGATG GTCGCAGCAT GGTGTTTGTG AATCGCACCA ACGGCAAGTT CAATATTGCC CGTATGGATC TTGAGACGCG TTTTATGCAG GTGCTGACGA CCACACGTTT GGATGAGTCG CCAAGTATAG CGCCTAACGG TACTATGGTT ATCTATGGCA CCACCTATCA GGGCCAACAG GTGTTGGCGG CTGTCTCTAT GGATGGACGA TTTAAGGCAA GATTGCCAGT GGGTCAAGGG GAGGTGAAGT CTCCTGCTTG GTCACCTTTC TTATAA
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Protein sequence | MKNLGRWLIL GLAFLTIPAK AALDIVITEG VDAARPIAVV PFVWQGSTPM PQQISDVVMS DLTRSGTFKP MDELGLPQRN LGSLAQMDLK AWSNVAAEAV VMGTVKPYGP DQYLVNFELI DLVKAQMQSG GPQSASEYLL DSRETVISSA QFRQYGHRIS DIVYEKLTGI RGAFLTRIAY VVVDHKAKSP YKLMIADYDG YNEQMLLRSP EPLMSPAWSP DGRRLAYVSF ENKQAEVFVQ DIYTQQRTKV TSFPGINGAP TFSPDGKKLA LTLSKDGQPE IYVADIATKA IKRVTNHYAI DTEASWTPDG KSLIFTSERG GRPQIYQVAL ASGKVTRLTF EGEWNLGGSI SPDGRSMVFV NRTNGKFNIA RMDLETRFMQ VLTTTRLDES PSIAPNGTMV IYGTTYQGQQ VLAAVSMDGR FKARLPVGQG EVKSPAWSPF L
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