| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1520 |
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| Symbol | |
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| ID | 4922463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1742957 |
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| End bp | 1743730 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163075 |
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| Product | ribonuclease T |
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| Protein accession | YP_001093646 |
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| Protein GI | 127512449 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | [TIGR01298] ribonuclease T |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0577175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.681349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGCT CCCATCGGAT ACTTCATAAT AGCCCCCCAC TCTTCACTTT GGATATTTTA
ATGAGCGATA TTTGCGACGC ACACAAACTT AAGCATAGAT TTCGTGGCTA CTTTCCCGTC
GTCATAGATG TTGAAACCGC GGGTTTTAAT GCTCAAACCG ATGCGTTGCT GGAGATCGCC
GTCACCCTGC TGAAGATGGA TGATAATGGC GACTTGGTGC TGGATAAGAC GCTGCATTAT
CATATCGAAC CCTTCGAAGG CGCCAACCTA GAGCCAGAAG CCCTGGCCTT CAATGGCATA
GACCCAAGCA ATCCACTGCG CGGCGCCGTC AGCGAGAAGG AAGCCTTCTT AGAGATCTTT
AAAGAGGTCA AGAAGCACCA GAAGGCATCA AATTGTCACC GCAGCATCAT AGTGGCCCAC
AACGCCGCTT TCGACCACGG CTTCGTCACC CAGGCGATTG AGCGCAACGC CCTCAAGCGC
ACACCATTTC ACCCCTTTGC TACCTTCGAC ACCGCCGCCC TTTCGGGGCT GGCGCTGGGT
CATACCGTTT TGGCCAAGGC CTGTGAGATT GCCGGTATCC CCTTCGACAA CAAAGAGGCT
CACTCCGCCC TGTATGATAC CGAGCGCACC GCCGAGCTGT TTTGTCATAT CGTCAACAAG
TGGAAGGCCT TAGGCGGCTG GCCGGTGGCC ACGCCTAGCG AAGAAACAGG TAGCGATGAA
GCCGCCAGCG AGCCGGCTAG CGGGCAAGAC ACAGATACGA GTGCTAACTG CTAA
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| Protein sequence | MTSSHRILHN SPPLFTLDIL MSDICDAHKL KHRFRGYFPV VIDVETAGFN AQTDALLEIA
VTLLKMDDNG DLVLDKTLHY HIEPFEGANL EPEALAFNGI DPSNPLRGAV SEKEAFLEIF
KEVKKHQKAS NCHRSIIVAH NAAFDHGFVT QAIERNALKR TPFHPFATFD TAALSGLALG
HTVLAKACEI AGIPFDNKEA HSALYDTERT AELFCHIVNK WKALGGWPVA TPSEETGSDE
AASEPASGQD TDTSANC
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