| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1519 |
|---|
| Symbol | |
|---|
| ID | 4922565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1741841 |
|---|
| End bp | 1742857 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640163074 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093645 |
|---|
| Protein GI | 127512448 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.323363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.955579 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAA TGGAGTTTGC GATTCCGGCC GAGGACAAGC AGGCCTTTAG TCAATATTAC
GCGAAACAGA TAGCCCCTAG GTGTCGGCGT TATGAGTCGG CTCGTCAGGC GGCGGCCGCT
AAGTATCTGG CCCGCAGAAA AATAAGCGCT CCCGTCACCC TGATAGGATT ACCTGTCTTT
TTGGCATTTT TTGCCCTGAG TTTTTATGGC GCAATAGTGC TCGATTTTGA AGATGGCGTA
TTTTATATCG GCTTTGCCGG CGCCTTTTTA TCTATCGTCG CGGTGGCAAG CGTTATCATC
TGGGCGAGTA GCGAGATAAA TCAATTGCGC ACTAAGATAG TCGATGAGAT CTATCCACTG
CTGCTCGGCT ATTTTGGCAA GAGCTTTGAG TTGAATCCGT CGAACTTACC CGAACTGGAT
GCTTATAAGG ACTATGGTCT CTTTCCAAAA TATGACAAGG GCTACTTTGA CGATTCGGTT
AAGGGAAAAT ACCACAATGT GCCTTTCCTG ATGAGAGAGC TGACGCTACT CGAGTATAAA
GGGACTAAAG ACAATAAACC CCAATACAAG ACCTTGTTCG AAGGGGTTTT GATTGAGTTT
ACGCTATTAA AGAAATTCTC TGGTAATACC CTGGTGCGTC AGGATAAAGG GGTTATTGGC
AACAGCTTAG TGCAGTTTAA ACAGAAGCTG ACACGGGTAA AGCTGGAAGA CCCAACCTTT
GAGCGAGAGT TTCAGGTGTA TAGCGACGAT CAAGTCGAGG CGAGATATTT GCTAAATACG
GCGACCATGG AGCGTTTGCT CTCACTGTCT CGTTTTTACC GTGGCGAACT AGAGGCGAGT
TTTAAAGATG GACGACTGCT GATTAAGATC GCTTGCAAGC ATAACTATTT TGAACCTAAA
CTGGATCTGT TAAAGCCACT GGATTTTGTC GAAGACATAG AGCAGGTGTT TAAGGAGATC
TATGAGGTGT TTGATTTAAT TAAAGCCCTG AATCTGGACA GTCGTACAGG GCTGTAA
|
|---|
| Protein sequence | MNPMEFAIPA EDKQAFSQYY AKQIAPRCRR YESARQAAAA KYLARRKISA PVTLIGLPVF
LAFFALSFYG AIVLDFEDGV FYIGFAGAFL SIVAVASVII WASSEINQLR TKIVDEIYPL
LLGYFGKSFE LNPSNLPELD AYKDYGLFPK YDKGYFDDSV KGKYHNVPFL MRELTLLEYK
GTKDNKPQYK TLFEGVLIEF TLLKKFSGNT LVRQDKGVIG NSLVQFKQKL TRVKLEDPTF
EREFQVYSDD QVEARYLLNT ATMERLLSLS RFYRGELEAS FKDGRLLIKI ACKHNYFEPK
LDLLKPLDFV EDIEQVFKEI YEVFDLIKAL NLDSRTGL
|
|---|
| |