| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1517 |
|---|
| Symbol | |
|---|
| ID | 4921090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1740080 |
|---|
| End bp | 1740661 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640163072 |
|---|
| Product | putative adenylyl cyclase CyaB |
|---|
| Protein accession | YP_001093643 |
|---|
| Protein GI | 127512446 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1437] Adenylate cyclase, class 2 (thermophilic) |
|---|
| TIGRFAM ID | [TIGR00318] adenylyl cyclase CyaB, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000378541 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.664583 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAT CCCCCATGAG CCAATCCCAT TTTGACGGCA AGTATGAAGT CGAGCATAAA
TACAGGCTCC AAGATAGAGA CGCCTTCTTA AGCAGGCTAG AGAGTCTCCC CCACGAGACT
ATGCTAAAAG ACAATGTCGA GTTTGATCGT TACTACGACA CCCCTTCGGG GCAGTTGGCT
CAGCAGAGCA AGCACTTGTG TATCAGGCAG ATGCACCCAT CAAACATCAA GCTGTGGATA
GTTAAAGGCC CTGGTGACAA GCAGTGTCAG GCGACTCGCA TCGACAATAT CGACAGCGCC
GCCGATATGC TACAAACCTT AGGTTATAAG GTAGTGCTGC AGCTTACCAA GACTCGCAGC
ATCTATTTTA TCGACCAGTA CCATGTGACG GTCGACAATC TCGAAGGCAT GGGGGATTTT
GCCGAGTTGG CGATCATGAC AGACGATGAG ACCCAGCTGG CATATCACGA ACAAGGCCTG
CTCGAGCTTG CCCAGCAGCT TGGCCTTACG CAAGAAGACA GGGAAACCCG CTCCTATCGC
GAGCTGATGC AAAAACGCCA ATCTGTACCC TCGCCCACTT AG
|
|---|
| Protein sequence | MSESPMSQSH FDGKYEVEHK YRLQDRDAFL SRLESLPHET MLKDNVEFDR YYDTPSGQLA
QQSKHLCIRQ MHPSNIKLWI VKGPGDKQCQ ATRIDNIDSA ADMLQTLGYK VVLQLTKTRS
IYFIDQYHVT VDNLEGMGDF AELAIMTDDE TQLAYHEQGL LELAQQLGLT QEDRETRSYR
ELMQKRQSVP SPT
|
|---|
| |