Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1460 |
Symbol | |
ID | 4922837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1682576 |
End bp | 1683229 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163014 |
Product | pseudouridine synthase |
Protein accession | YP_001093586 |
Protein GI | 127512389 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTT TTAGTTACCA GCCCCCGGCT ATTCCCTGGC TCGACATACG CTACCAAGAT CGCGACATTA TCATAATCAA CAAGCCATCT GGCCTGTTGT CTAATCCCGG CCGCGCCGCG GAGACCCATG ACTGCGCCAT CAACCGCCTG TTGCAGCGTT TTCCCGAAGC GATCCTGGTG CACAGGCTCG ACTGCGCCAC CTCTGGCATC ATGGTATTCG CCCTCAACAA GAAGGCCGAG TCTCACCTCA AGACCCAGTT TCAAAACCGC ACCACAGAAA AATATTATGT GGCCGAGGTC GAGGGCCTGA TGGCCCAGGA CAGTGGCAAG ATAGAGTTGG CGATGAAGCC TGATAGCGAG CAACCGCCGC TACAGAAGAT TGCCGAGGAT GGCAAACCGG CGACCACCTA TTTTGAGGTG CTGGAGCGAC GCAGCAACAG CACTCTGGTG AAACTCAAGC CGATCACGGG GCGAACCCAC CAGCTCAGGT TACACATGAA GGCGCTGGGC CACACCATAC TGGGTGATGA TTTCTATGGC GACGAAGCCA TTATTGCCGC CGCGCCGCGT CTGCACCTGC ATGCCGAGCA CTTGAGCATC ACTCATCCCT ACAAGCAGAC CAGACTGAGC TTCTCGAGTC TGCATCCCTT CTAA
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Protein sequence | MKIFSYQPPA IPWLDIRYQD RDIIIINKPS GLLSNPGRAA ETHDCAINRL LQRFPEAILV HRLDCATSGI MVFALNKKAE SHLKTQFQNR TTEKYYVAEV EGLMAQDSGK IELAMKPDSE QPPLQKIAED GKPATTYFEV LERRSNSTLV KLKPITGRTH QLRLHMKALG HTILGDDFYG DEAIIAAAPR LHLHAEHLSI THPYKQTRLS FSSLHPF
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