Gene Shew_1452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1452 
Symbol 
ID4922901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1673444 
End bp1674955 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content61% 
IMG OID640163006 
ProductAraC family transcriptional regulator 
Protein accessionYP_001093578 
Protein GI127512381 
COG category[L] Replication, recombination and repair
[F] Nucleotide transport and metabolism 
COG ID[COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[COG2169] Adenosine deaminase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCTG AGGCGCAGCA TCCCAAGGCG GAGCAGTATC GCACCGCGCG TCTGTCACGG 
GACGCCAGAT TCGATGGCCT GTTCTTCGTC GGCGTCTTCT CCACCGGCAT CTTTTGTCGT
CCTATCTGCC CGGCGGTGCC TGCCAAGGAG GCCAATGTGA GGTATTTCGA CGATGCCCTG
TCGGCGGCTC AGGCTGGCCT GAGGCCCTGT CTGCGTTGTC GCCCGGACAG CGCGCCGGGC
TCAAATCCCT GGCTTGGTAA ACAGACCAGC CTGAATCGCG CCATGAGTCT CATCGACGCC
GGCGTCTTGT GCGGCCCCCA GGCGATCCCT ATGACTGGGC TCGCCGAGCG ATTAGGGATC
AGCGAGCGTT ACCTGAGGCA ACTGTTTCAC GACAGCCTGG GCACCTCGCC CAAGCAATAT
GCCCTGTATC AACAGCTGAT GTTTGCCAAA CAGTTGCTGC ATCAGACCAA GATGCCGATC
ACTCAGGTGG CCTATGCCGC CGGGTTTAAC AGCGTGAGGC GCTTCAACGA GATCTTTCGC
CAGCAGCTGC AGTTGACCCC GAGTGAGATC CGTAAGGCCA CGGGCCAGCC GTCGCTGCCC
GTCCAGGGCC TGACACTCAA GCTTGCTTAT CGTCCGCCCT ATGATTGGCA ACACCTGCGC
AGCTTCTTCG CACAGCGCGC CGTGCCCGAG ATGGAGTGGC TAGATGAACA GAGCTATGGC
CGCAGCTTCG TGCTCGGCGC CGCCAAGGGC TATTTCTGCG CAGTCCATAG TGAGCAAGAG
GCCTGCTTTC ATGTCACCAT TCATCTCGCC GAGGCGGACT CACTCAGCCA GCTCAAGGGG
ATCATCAGTC ATATTCGTCG CATTCTGGAT CTCGACGCCG ACATGCTCAC CATAGGCGAT
AAGCTGCAAG CGCTGGGTAA GGCTCTGCCT CAGGTATCGC CTGGCCTGCG TCTGCCCGGC
GTCTGGTCGC CTTTCGAGGC GGCTTGCCGC GCCATCTTAG GTCAGCAGGT GAGTGTGACC
CAGGCGATCA AGCTCTTGGG GCAACTGGTG GCCGATCATG GCGAGACGAT TAGCCTAAAT
GAAAAAACGG TGCGTCTGTT CCCGACTCCT GCGGCGCTAG TGGATGCCAG CCTGGATGGG
CTTAAGATGC CGGGGATCAG AAAAGAGGCG ATTCGTGCCC TGGCGGCCTT TGTGATGGCT
AACCCCGAGT CGGAAATAGA CGACTGGCTA CAGATCAAGG GGATAGGCCC CTGGACTTTG
GATTATGTGC GCCTGCGGGG CCTGAGCCTG CCAGACGTGC TGCTGGTTGG CGATCTCGTG
GTCAAACAGC AACTGCTGGT GAACCTGCGA CCCGAGCCGT CCAGTTGTGA TGGTGAGCCT
GCTGAAGACG AAGATCCCAA GGCGGCGAAG AAGCGGGCGC AGGCACAATA TCAGGCGCTC
AGCCAAGCCG TGCTACGGCA GGTCGCCCCC TGGGGCAGTT ATCTCACCCT GCAGCTCTGG
AATCGGCAGT AG
 
Protein sequence
MQAEAQHPKA EQYRTARLSR DARFDGLFFV GVFSTGIFCR PICPAVPAKE ANVRYFDDAL 
SAAQAGLRPC LRCRPDSAPG SNPWLGKQTS LNRAMSLIDA GVLCGPQAIP MTGLAERLGI
SERYLRQLFH DSLGTSPKQY ALYQQLMFAK QLLHQTKMPI TQVAYAAGFN SVRRFNEIFR
QQLQLTPSEI RKATGQPSLP VQGLTLKLAY RPPYDWQHLR SFFAQRAVPE MEWLDEQSYG
RSFVLGAAKG YFCAVHSEQE ACFHVTIHLA EADSLSQLKG IISHIRRILD LDADMLTIGD
KLQALGKALP QVSPGLRLPG VWSPFEAACR AILGQQVSVT QAIKLLGQLV ADHGETISLN
EKTVRLFPTP AALVDASLDG LKMPGIRKEA IRALAAFVMA NPESEIDDWL QIKGIGPWTL
DYVRLRGLSL PDVLLVGDLV VKQQLLVNLR PEPSSCDGEP AEDEDPKAAK KRAQAQYQAL
SQAVLRQVAP WGSYLTLQLW NRQ