Gene Shew_1420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1420 
Symbol 
ID4922710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1634084 
End bp1634827 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content46% 
IMG OID640162959 
Productputative hydrolase 
Protein accessionYP_001093546 
Protein GI127512349 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1387] Histidinol phosphatase and related hydrolases of the PHP family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0157701 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTTC TTGTTGATGT TCATGCACAT ACCATAGCTT CTACTCATGC CTATAGCACG 
GTTCATGATT ATCTGGCTGT GGCGAAAGAG AAGGGCATTA AGCTGTTTGC CATTACTGAT
CATGGGCCCG ATATGGCTGA TGCGCCGCAC TTTTGGCACT TCGTCAACAT GCGAGTATTG
CCTCGAATTG TCGATGGTAT CGGTGTGCTC CGAGGTATTG AAGCCAATAT CAAAAACGAA
AATGGTGATA TTGATTTCTT TGGTAGTTAT CTCAATGAAT TAGACATCGT GCTAGCGGGA
TTTCACGAGC CAGTTTTTCA GCCATCCACT CAAACTACCC ACACTCAGGC GTTAGTCAAT
TGCATTGAAA GTGGCAATGT CGATATCATC AGTCATCCTG GCAACCCAGC TTATCCCATC
GACATTAAGC GTGTTGCGGA AGTGGCCGCG ACCCACAATG TTGCCCTTGA GATAAATAAC
TCCTCATTTT TGACCTCGCG AAAAGGTAGC TTGAAAAACT GCACGGCAAT AGCCCGTGCA
GTAAAAGAGG CCGGAGGCTA TTTGGTCTTG GGATCAGACT CCCATGTTGC CTTCAGCTTA
GGTGGCTTTG ACAAAGCGAT TGAGTTGATT CAAGAAGTTG ATTTCCCGAT TGAGCGAATT
CTTAACCATA GTCCCAAAGC CCTGCTGGAG TTCTTAACGT CAAGGGGTCA TAAAGGGATG
GATGAATATG CGGAGATTGT TTAA
 
Protein sequence
MKFLVDVHAH TIASTHAYST VHDYLAVAKE KGIKLFAITD HGPDMADAPH FWHFVNMRVL 
PRIVDGIGVL RGIEANIKNE NGDIDFFGSY LNELDIVLAG FHEPVFQPST QTTHTQALVN
CIESGNVDII SHPGNPAYPI DIKRVAEVAA THNVALEINN SSFLTSRKGS LKNCTAIARA
VKEAGGYLVL GSDSHVAFSL GGFDKAIELI QEVDFPIERI LNHSPKALLE FLTSRGHKGM
DEYAEIV