| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1399 |
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| Symbol | |
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| ID | 4921441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1609752 |
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| End bp | 1612514 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640162940 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_001093527 |
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| Protein GI | 127512330 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00159215 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0100644 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTACAAC GAACCAAAAA AGTCATTATA ACAGCGGTTG CCGCACTGTT TTTGGTGGGG
ACCCAGGTGC AGGCCATCAC GCCTTCGCCG CAAATGATAG AGCAGTTTAA AAATCTGCCA
GCTTCTGAGC AGCAAAGACT TGCCCGCCAG TATGGAATCG ATCCTGCGAT GCTCGGCGGC
GCGAGTGTAT CGCAGCAAAA TCTCGATAAT CCGCAAGTCG TTCAGCCTCG AGTAAATGAT
CAATTTAGTC AGCCTCGTGC AACTAATGAC GTGGTCGATC ATTCCCGCGA TGCGGCTAAT
GAACTTAATT TCTCACAGGA TGAACAGAAG AAGCAGCTAG CACGTTTTGG TTATGAGCTT
TTTCAAGGTG AACCTACCAC TTTTGCGCCC GTCTCTGACG TGCCAGTTCC TGGTGAATAT
TTGGTTGGTC CTGGCGACAG AATTAAGGTA CAGCTCTTTG GCAAAGAGAA TAAAGAATAT
GACCTGGTGA TTAATCGAGA GGGGAGCATT CAATTCCCCG AACTAGGTCC TATCTCAGTA
GCGGGTTTAA GTTTTGCCGA GCTTCGAGAG TCTCTGAGTC ATCGTATTTC TCAGCAGATG
ATAGGGATTG AGTCGAACAT CACCATGGGT GAGCTACGCT CTATTCGTAT CTTTATCGCG
GGTGATGCCT ATAAGCCAGG TTCATACACC GTCTCGAGTC TGTCTACTAT CACCCAAGCG
TTGTTTGTCG CAGGCGGGGT GAACGAGATT GGTTCACTGC GTAACATTCA GGTCAAGCGT
AACGGAAAAC TAGTCGGCAG CATGGATCTG TATGATCTAC TTATGCGAGG TGATGCGTCG
GGAGACATAC GTTTGCGTTC AGGCGATGTA GTGTTTATTC CCCCAGTAGG TGGGCTCGTA
AGTATTACTG GCGAAGTGCG TCGCCCTGCT ATCTACGAGC TAAAACGTAA CGAAACGGTT
GCCGATATCG TCGCTATGGC CGCTGGCGTG AAACCCGGTG CCTATCCAAA GAGCAGTAGC
ATAGAGCGAT ATAATAGTAA TGGCCTTCGC AGTATCGTGA ATGTCGATCT GACTTCTACT
CAAGGTAAAT CAACAAAGGC CCAAGCCGGT GACTTTATTC GCGTAAAAAA TGCTTCTGGT
CAGTTTGAAG ATGCCATTAC CGTGGTTGGT GCCGTCGTTC GACCAGGAAA ATATCAATGG
TTTGATGGCC AAAAAGTAAG CGATCTTCTG CCGTCACTTT GGGGCGATCT TTCAATTTCA
GCCGATCTCA ATTATGCGAT TATTGTGAGA GAGGTGAATC GCTACGGAAA GGTTAAGGTA
CTTCAATTCT CTCCTAGCCG CGCTATCGCC GAGAAAGATG TCACGCAAGA TTTGTTATTA
GCCCCTCGTG ATAAGGTCAT GCTGTTCAAC TATAGCGATG ATACACAAAA TCGTTACGAG
CTTAATAAGT TGGTTAAACA TAGAGTTAAA AAGGTGACCT CACTTACGGG TGATAGCCTT
GTAGGTAATG ATCTGTTTAA GGCTGGCTTC TCTCAGCTCG ATAAGATGCA ACTTTCACAA
CGTAGTCAAA TTGGTGGTGT AGTTGTAGCT AAAGAAGCGC CTGATGATAA AGAGCAGCTT
GTAAAGGGTG AAGTCAATAA GATGCTGGCT AACCTATTTG AGGATAAGGA GCTCATTAAG
CTTAGTGGCT CAATGAATCG TAGTGAGCTG CTTTATCCCG TTGTTGCACA GCTAGCTGCT
CAAGGTAACT CAGATAAAGG CACGCAAGTC GTCGCCATCA GCGGTAAGGT ACGTCATCCA
GGTGTGTATC CCCTTTCTCA AGGGGCTAAG GTTAAAGACT TAGTCATTGC TGCGGGTGGA
TTGGTTGAAG GTGCCTACAC GGCTCGAGCA GAATTGACTA CTACGGTAAT TGGAAGCGAA
GAGTCTAGCG TTAACCATTC AAGTGTTAAT TTAGATGACG CATTGGCAGG GATTGATAGT
GCCAATGTGG TGTTAAGTTC CAGAGACATC TTGACGGTAA TGACAACGCC TGATTGGCAG
GAAAACAAGG CGGTTGAGAT TCGTGGTGAG GTAAAATTCC CAGGCATGTA TAACATTCGC
CGTGGTGAAA CGCTTGCCGA CGTGATCGAT CGTGCAGGTG GCTTTACTCA GTACGCGTAT
TTACCTTCTT CTGTGTTTGT TCGCGAGTCA GTGCGTCAAC AAGAACAGCT GGAAATTAAA
AAGCTTGCCG ATCAACTTAG ACGAGACATA GCTACTCGCG GTGTATCTAA AGATGGCAAT
GTGGTGAATT ACAGCGATGC AAAAATGATG CTTACCGACC TTGAAAACAT CAAGGCGGTA
GGCCGTTTGG TTGTTGATTT GTCTGCTATA TCGATTGGTA TCGAACAGGC CGATATTCAG
CTTGAAGATC AAGATATTCT TTATGTGCCG TCGGTCAAGC AGACGATTGC GGTAATGGGT
GAGGTGCAAC ACGCTGCCAC TCATAGGTTT AAAGAAGGCT TAACGTTAGA TCAGTATCTT
GAGATGTCTG GTGGAGCCAG AGAGCGCGCC GATGAAGACA GAACCTACAT TATTAAGGCA
AATGGTTCGG TGCTCCTCCC GAATCGTTCA ATGTGGTTTA GCAGTAATAC TGAGCTCAAT
CCTGGTGACA CCATTATTGT ACCGCTGGAT ACAGAGTATA AAGATAACCT CACACTCTGG
ACCCAGGTTA CCGGCATTAT TTATAACAGC GCCGTTGCAT TGGCCACGAT TGCCAAACTA
TAG
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| Protein sequence | MLQRTKKVII TAVAALFLVG TQVQAITPSP QMIEQFKNLP ASEQQRLARQ YGIDPAMLGG
ASVSQQNLDN PQVVQPRVND QFSQPRATND VVDHSRDAAN ELNFSQDEQK KQLARFGYEL
FQGEPTTFAP VSDVPVPGEY LVGPGDRIKV QLFGKENKEY DLVINREGSI QFPELGPISV
AGLSFAELRE SLSHRISQQM IGIESNITMG ELRSIRIFIA GDAYKPGSYT VSSLSTITQA
LFVAGGVNEI GSLRNIQVKR NGKLVGSMDL YDLLMRGDAS GDIRLRSGDV VFIPPVGGLV
SITGEVRRPA IYELKRNETV ADIVAMAAGV KPGAYPKSSS IERYNSNGLR SIVNVDLTST
QGKSTKAQAG DFIRVKNASG QFEDAITVVG AVVRPGKYQW FDGQKVSDLL PSLWGDLSIS
ADLNYAIIVR EVNRYGKVKV LQFSPSRAIA EKDVTQDLLL APRDKVMLFN YSDDTQNRYE
LNKLVKHRVK KVTSLTGDSL VGNDLFKAGF SQLDKMQLSQ RSQIGGVVVA KEAPDDKEQL
VKGEVNKMLA NLFEDKELIK LSGSMNRSEL LYPVVAQLAA QGNSDKGTQV VAISGKVRHP
GVYPLSQGAK VKDLVIAAGG LVEGAYTARA ELTTTVIGSE ESSVNHSSVN LDDALAGIDS
ANVVLSSRDI LTVMTTPDWQ ENKAVEIRGE VKFPGMYNIR RGETLADVID RAGGFTQYAY
LPSSVFVRES VRQQEQLEIK KLADQLRRDI ATRGVSKDGN VVNYSDAKMM LTDLENIKAV
GRLVVDLSAI SIGIEQADIQ LEDQDILYVP SVKQTIAVMG EVQHAATHRF KEGLTLDQYL
EMSGGARERA DEDRTYIIKA NGSVLLPNRS MWFSSNTELN PGDTIIVPLD TEYKDNLTLW
TQVTGIIYNS AVALATIAKL
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