Gene Shew_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1397 
Symbol 
ID4923809 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1606406 
End bp1607875 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content51% 
IMG OID640162938 
Productamino acid/peptide transporter 
Protein accessionYP_001093525 
Protein GI127512328 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000128075 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.33376 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCAG CAAAACCCCA AGGTACGATG CTCGGCCATC CTAAGGGACT GTTCCTGTTG 
TTTACAACTG AGTTATGGGA ACGTTTCAGT TACTATGCGA TGCGAGCCAT CCTGGTACTT
TATCTCGTCG ATGCAGTACA ATCCCAAGGT GGTCACGGTC TAGGTTGGAC CCAGGCAGAC
GCCCTAAATC TTTATGGTAC ATTCACAGGT CTTGTTTATC TGACTCCCCT CATCGGTGGC
TGGCTCGCCG ATACATTCCT AGGTCAACGT AAAGCCATCA TGATAGGTGG CGCCCTGATG
GCCGCTGGTC AATTTATTCT TGGTACTCCT CACGCTTGGG TACAAGGCAT GGAAACTGAA
GTCTTCTATG TTGGTCTGGG CGTCCTAATC TTAGGTAACG GCCTATTCAA GCCAAACATC
TCTACCATGG TAGGTGACCT CTATGAAGAA GGCGATCACC GCCGAGACGG TGCATTCACC
ATCTTCTACA TGGGTATTAA CGTAGGTGCC TTCCTGTCGG GCATCATAGT TGGTTCGGTC
GTGGCTTACT TCGATGGTAA CTTCCAAGCA GGCTTCATCT GCGCCGGTAT CGGTATGATC
CTCTCACTGA TCATCCAGTT CCTGTTCGCA CAAAAGCTGC TAGGCGATAT CGGTCGTGTA
CCAGCCGCCC AACTTGAAAA GCAGAGAGCA GCAGAAAAAG GTGAAGTGCG CAAAGAGCCG
CTAACCAAAG TTGAGCGTGA TCGCATCAAA GTGATCATGG TCATGGGTCT GTTTACCATT
ATCTTCTGGG CAGGCTTCGA GCAAGCCGGT GGCCTAATGA ACCTCTTCAC CAACGACTTC
ACCGACCGTA TGATCGGCAG CTGGGAAGTC CCAACTACCT GGTTCCAATC GCTGAACGCT
ATGTTCATCG TGATCTTCGC CCCTGTAGTT GCCTCTATCT GGGTTCGCCT GGGTGACAGA
GAGCCAAACT CTCCGGTGAA ATTCGCGCTA GGCCTGGTAC TGCTTGCAAC AGGCTTCCTG
TTCATGATCG GTGCGGTACT CGAGATGGGC GGTGACGCTA ATGCCAAGTC AAGCATGTGG
TGGTTGGTAG GTGCTTATTT CTTCCACACC ATGGGTGAAC TATGTCTCTC TCCAATCGGC
CTGTCTATGG TCACTAAGCT GGCTCCACTG CGTATCGCAT CACTCATGAT GGGTGCATGG
TTCCTGTTTG TTGCCGCGGC TAACAAGATT GGCGGTATCA TCGGTTCATT CATCGGCCAT
GGTGGTGCAA AAGAGGAGCA GCTAGCCAAC GCTATGTCTA TCTTCGCCGG TATCGCTATC
ACGGCCGCAC TGTCAGGCGT TATCCTCTAC TTCATGGCGG ATAAACTGGT TGACTGGATG
CATGGCGCCG AAGATAGCCA CCACACAGAA GAAGAAGCCT TAGAAGAAGA GATTGCTATC
ACTGCCGAGC ATGAAGCAAT TAAGCGCTAA
 
Protein sequence
MSAAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDAVQSQG GHGLGWTQAD 
ALNLYGTFTG LVYLTPLIGG WLADTFLGQR KAIMIGGALM AAGQFILGTP HAWVQGMETE
VFYVGLGVLI LGNGLFKPNI STMVGDLYEE GDHRRDGAFT IFYMGINVGA FLSGIIVGSV
VAYFDGNFQA GFICAGIGMI LSLIIQFLFA QKLLGDIGRV PAAQLEKQRA AEKGEVRKEP
LTKVERDRIK VIMVMGLFTI IFWAGFEQAG GLMNLFTNDF TDRMIGSWEV PTTWFQSLNA
MFIVIFAPVV ASIWVRLGDR EPNSPVKFAL GLVLLATGFL FMIGAVLEMG GDANAKSSMW
WLVGAYFFHT MGELCLSPIG LSMVTKLAPL RIASLMMGAW FLFVAAANKI GGIIGSFIGH
GGAKEEQLAN AMSIFAGIAI TAALSGVILY FMADKLVDWM HGAEDSHHTE EEALEEEIAI
TAEHEAIKR