Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1397 |
Symbol | |
ID | 4923809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1606406 |
End bp | 1607875 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640162938 |
Product | amino acid/peptide transporter |
Protein accession | YP_001093525 |
Protein GI | 127512328 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000128075 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.33376 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAG CAAAACCCCA AGGTACGATG CTCGGCCATC CTAAGGGACT GTTCCTGTTG TTTACAACTG AGTTATGGGA ACGTTTCAGT TACTATGCGA TGCGAGCCAT CCTGGTACTT TATCTCGTCG ATGCAGTACA ATCCCAAGGT GGTCACGGTC TAGGTTGGAC CCAGGCAGAC GCCCTAAATC TTTATGGTAC ATTCACAGGT CTTGTTTATC TGACTCCCCT CATCGGTGGC TGGCTCGCCG ATACATTCCT AGGTCAACGT AAAGCCATCA TGATAGGTGG CGCCCTGATG GCCGCTGGTC AATTTATTCT TGGTACTCCT CACGCTTGGG TACAAGGCAT GGAAACTGAA GTCTTCTATG TTGGTCTGGG CGTCCTAATC TTAGGTAACG GCCTATTCAA GCCAAACATC TCTACCATGG TAGGTGACCT CTATGAAGAA GGCGATCACC GCCGAGACGG TGCATTCACC ATCTTCTACA TGGGTATTAA CGTAGGTGCC TTCCTGTCGG GCATCATAGT TGGTTCGGTC GTGGCTTACT TCGATGGTAA CTTCCAAGCA GGCTTCATCT GCGCCGGTAT CGGTATGATC CTCTCACTGA TCATCCAGTT CCTGTTCGCA CAAAAGCTGC TAGGCGATAT CGGTCGTGTA CCAGCCGCCC AACTTGAAAA GCAGAGAGCA GCAGAAAAAG GTGAAGTGCG CAAAGAGCCG CTAACCAAAG TTGAGCGTGA TCGCATCAAA GTGATCATGG TCATGGGTCT GTTTACCATT ATCTTCTGGG CAGGCTTCGA GCAAGCCGGT GGCCTAATGA ACCTCTTCAC CAACGACTTC ACCGACCGTA TGATCGGCAG CTGGGAAGTC CCAACTACCT GGTTCCAATC GCTGAACGCT ATGTTCATCG TGATCTTCGC CCCTGTAGTT GCCTCTATCT GGGTTCGCCT GGGTGACAGA GAGCCAAACT CTCCGGTGAA ATTCGCGCTA GGCCTGGTAC TGCTTGCAAC AGGCTTCCTG TTCATGATCG GTGCGGTACT CGAGATGGGC GGTGACGCTA ATGCCAAGTC AAGCATGTGG TGGTTGGTAG GTGCTTATTT CTTCCACACC ATGGGTGAAC TATGTCTCTC TCCAATCGGC CTGTCTATGG TCACTAAGCT GGCTCCACTG CGTATCGCAT CACTCATGAT GGGTGCATGG TTCCTGTTTG TTGCCGCGGC TAACAAGATT GGCGGTATCA TCGGTTCATT CATCGGCCAT GGTGGTGCAA AAGAGGAGCA GCTAGCCAAC GCTATGTCTA TCTTCGCCGG TATCGCTATC ACGGCCGCAC TGTCAGGCGT TATCCTCTAC TTCATGGCGG ATAAACTGGT TGACTGGATG CATGGCGCCG AAGATAGCCA CCACACAGAA GAAGAAGCCT TAGAAGAAGA GATTGCTATC ACTGCCGAGC ATGAAGCAAT TAAGCGCTAA
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Protein sequence | MSAAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDAVQSQG GHGLGWTQAD ALNLYGTFTG LVYLTPLIGG WLADTFLGQR KAIMIGGALM AAGQFILGTP HAWVQGMETE VFYVGLGVLI LGNGLFKPNI STMVGDLYEE GDHRRDGAFT IFYMGINVGA FLSGIIVGSV VAYFDGNFQA GFICAGIGMI LSLIIQFLFA QKLLGDIGRV PAAQLEKQRA AEKGEVRKEP LTKVERDRIK VIMVMGLFTI IFWAGFEQAG GLMNLFTNDF TDRMIGSWEV PTTWFQSLNA MFIVIFAPVV ASIWVRLGDR EPNSPVKFAL GLVLLATGFL FMIGAVLEMG GDANAKSSMW WLVGAYFFHT MGELCLSPIG LSMVTKLAPL RIASLMMGAW FLFVAAANKI GGIIGSFIGH GGAKEEQLAN AMSIFAGIAI TAALSGVILY FMADKLVDWM HGAEDSHHTE EEALEEEIAI TAEHEAIKR
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