Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1380 |
Symbol | flhA |
ID | 4923611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1588319 |
End bp | 1590418 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162921 |
Product | flagellar biosynthesis protein FlhA |
Protein accession | YP_001093508 |
Protein GI | 127512311 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.329367 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTGA AAGCAACGCT CGGTCAGATA AAACAGGTAA AACCCGCCAA TTTTAAAGGG ATAGGTACGC CCATATTGGT GCTTGCGGCG CTGGCGATGA TCGTCTTGCC CATGCCGGCC TTCCTGTTGG ATATCCTGTT TTCTTTTAAT ATCGCCTTGG CCCTGGTGGT CTTGCTGGTG GCCATCTATA CCGACCGCCC CCTGGATTTT GCTGCCTTTC CCACAGTGCT GCTGGTTGCT ACCTTGCTGC GTTTGGCGCT TAACGTCGCC TCGACCCGTA TCGTCTTACT CGAGGGGCAC AACGGTGGCG ACGCCGCCGG TAAGGTGATT GAGGCCTTCG GCTCAGTGGT GATTGGCGGT AACTATGCCG TGGGTCTGGT GGTGTTTCTT ATCCTGATCA TCATCAACTT CGCCGTGGTA ACCAAGGGCG CCGGACGTAT CTCAGAGGTG AGCGCTCGCT TCACACTAGA TGCCATGCCA GGTAAGCAGA TGGCAATCGA CGCCGACCTT AACGCCGGGA TCCTTAATCA AGATCAGGCG CGTATTCGCC GCGCCGAAGT AACCAAGGAG GCCGACTTCT ATGGTGCGAT GGATGGTGCC TCCAAGTTTG TAAAAGGCGA TGCCATCGCC GGTATCATGA TTCTGGTGAT CAACATCCTG GGCGGTTTCG TCATAGGTAT GGCCCAGCAT GGGCTGGACT TCTCCTCTGC GGTTGAGATC TACACCCTAT TGACTATCGG TGATGGCCTG GTGGCGCAGA TCCCTGGTCT CTTGCTCTCC ATCGCGGCGG CCTTGATGGT GACCCGTCAA AACGAATCTG GCGACATGGG ACAGATGGTT ATGAGCCAGA TGTTCGACAA CCCTAAGTCG CTGGCCATCG CCGCCGGCGT CCTGCTGACC ATGGGCATAG TGCCTGGCAT GCCGCATTTC GCTTTTCTCA GCTTTGGCCT GATCACCGCG GGTGGTGCCT ATTTTCTGCA TCGTAAGAAA GATCTCGACA GACAACGTGC CTTGGAGATC GCCAAGTCCT CACCAGCGAC TCCCGGCGAT GCCAAGCCCA AAGAGCTTAG CTGGGATGAT GTGCAGCAGG TGGACACCAT TGGTCTGGAG GTGGGCTATC GTCTGATCCC GCTGGTGGAT AAGGGCCAGG GTGGTGAGCT GCTTGGACGT ATCAAGGGCG TGCGTAAGAA GCTCTCTCAA GAGCTGGGCT TTCTTGTTCC CGCCGTGCAT ATTCGCGATA ACCTGGATCT GGCGCCAAAC ACCTATAGGA TCTCCCTGAT GGGTGTGGCC TCAGGTGAGG CGGATATTCG TCACGATTGT GAACTGGCCA TCAACCCAGG TCAGGTTTAC GGCAAACTAG ATGGTGTCGA GACCACAGAT CCCGCATTTG GTTTAGAGGC GGTATGGATC GCCCCTGAGC TCAGAGAACA TGCTCAGACT CTAGGTTATA CCGTGGTGGA TGCCGCTACC GTAGTGGCGA CTCACCTGAG TCAGCTGTTA ACCAATAACG CCTCCAAGCT GCTGGGCTAC GAAGAGGTGC AGCAGCTGAT GGATATGCTG GCCAAGCATT CGCCTAAGCT GGTCAGTGGT TTCATTCCCG ATGTCTTGCC GCTGGGCACT GTGGTCAAGG TGATGCAGAA CCTGCTTAAC GAAGGCGTGT CGATCCGCGA CCTTAAGACC ATAGTTCAGA CTCTGCTCGA GTACGGGCCT AAGAGTAACG ATACCGAGGT GCTTACCGCT GCTGTACGTA TTGCACTTAA ACGCATGATT GTTCAAGAAA TAAGCGGTCC AGAGCCGGAA ATTCCTGTCA TTACTTTGGC GCCCGAATTG GAACAGATGT TGCATCAGTC TATGCAGGCA ACGGGAGGCG AGGGGCCGAA TATCGAACCT AGCCTTGCCG AGAGGATGCA AAAGTCGTTA CTCGACGCAT CCCAGCGTCA GGAGATGGTG GGCCAACCAG CCATCCTACT GACATCGGGT ATGTTACGTT CGACGCTGTC GCGTTTTGTT AAACATACGA TTCCAAATCT GCGGGTGATC TCTTACCAAG AGGTACCCGA TGAGAAACAA ATTCGCATCG TATCAGCGGT CGGCCAGTAG
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Protein sequence | MDLKATLGQI KQVKPANFKG IGTPILVLAA LAMIVLPMPA FLLDILFSFN IALALVVLLV AIYTDRPLDF AAFPTVLLVA TLLRLALNVA STRIVLLEGH NGGDAAGKVI EAFGSVVIGG NYAVGLVVFL ILIIINFAVV TKGAGRISEV SARFTLDAMP GKQMAIDADL NAGILNQDQA RIRRAEVTKE ADFYGAMDGA SKFVKGDAIA GIMILVINIL GGFVIGMAQH GLDFSSAVEI YTLLTIGDGL VAQIPGLLLS IAAALMVTRQ NESGDMGQMV MSQMFDNPKS LAIAAGVLLT MGIVPGMPHF AFLSFGLITA GGAYFLHRKK DLDRQRALEI AKSSPATPGD AKPKELSWDD VQQVDTIGLE VGYRLIPLVD KGQGGELLGR IKGVRKKLSQ ELGFLVPAVH IRDNLDLAPN TYRISLMGVA SGEADIRHDC ELAINPGQVY GKLDGVETTD PAFGLEAVWI APELREHAQT LGYTVVDAAT VVATHLSQLL TNNASKLLGY EEVQQLMDML AKHSPKLVSG FIPDVLPLGT VVKVMQNLLN EGVSIRDLKT IVQTLLEYGP KSNDTEVLTA AVRIALKRMI VQEISGPEPE IPVITLAPEL EQMLHQSMQA TGGEGPNIEP SLAERMQKSL LDASQRQEMV GQPAILLTSG MLRSTLSRFV KHTIPNLRVI SYQEVPDEKQ IRIVSAVGQ
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