Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1371 |
Symbol | |
ID | 4923153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1580960 |
End bp | 1582666 |
Gene Length | 1707 bp |
Protein Length | 568 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162912 |
Product | flagellar hook-length control protein |
Protein accession | YP_001093499 |
Protein GI | 127512302 |
COG category | [N] Cell motility |
COG ID | [COG3144] Flagellar hook-length control protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.358506 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.685511 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCACAGA TGACCCAAAT ACTCCTATCT AATGTCGAGC CCGGCAAAGA GAAAGTCGGG GTGTTGCCCA GTGCATCAGA TGCGAAGTCG ACCGCAGAGT CTAAGTCAGA AAACAAAGGT TTTTCAGAGG CTTTGGCTAA GGCGAGTGGC CAGGATGAGG TGAACTCACA GGCAAAAACG CGCCACCAGT CCCAAGCCGA AAACGTGGCT CAACGCGATA ACACTGATAA GGCCGATGTT AAGCAGGAGA AGGCGCCCAC GCAGGACAAA GAGAGCGACG ATGTCTCCAA CGTGCTGGCG CAGATCCATC TGGCGAACAA GCTGGGGGAT GAGGCGGAAT TTGCCGCCGA CGGCGTCATT TTGCCGCCGG GTGATGCTGA TGGTGAGTCA TCTGCCGACA ATGAGCTGCT TCCTACCTTT GTAAAAGGGG CTAAGGACAA GGTCGATACC GAAAAAGCGG CCTTAGAGGG TATAGATGAG CTGCTTAACC CCGGCGCCGG AGATGATCAT ATCTTACCCG TCATCAATCC AAATAGCCTG GGGAGCGAGG CGATATTGGC TCAGCTTCCC GAAGATGCTT TAAGTGAGGT GATGGCGCAA ACCGGTTTGT CCAAGGATGA GCTGACGGCC TTACCGCCGC AGATGCTAGA GGGGCTTATT CATGGCATAG CGGGTAAGAA TAAGTCTGGA AATGGTGAGC TTGGTCAAGC TGAGGCGCTA GAGAGTGATG CTGCCAAGCT GGCGGCACTT ATTAATGACG CCAAGCAATA TCTCTCGGCC AAGGCGAGTC AGTCGCAAAG CAACCTTGCT GCAACTCAAA CTGAGCCTTC ACAAGGTGCA GGCGGTGCCA GTCAGGCGGG ACTAAATCAG GTTGGGCTAA ATCAGAATGA GATTAGTCAA ACAGGCCTAA CCTCGGCCAA TAACGCGAGC GGCGTGGAAA GTGCCGTTAA TGAGAAAGGC GTGAAAGCCA TATTGGGTGA ATCCAAGGTT GGTGAGTCTA AGTTTGGTGA AGCTAAGCTA GCTGACGCCA AGCTTGCCGC CGAGCAGGCA CAAAATGGTG CTCTGAAGAC GACCTCGGGC GCAGAGGGCC GCGATGGCAA AGCCGCGCAG GAGCTGCTGA AGGGCGCTAA CCTTGCCGTG ACCATGTCGC CAAAGGCCGG TGAAATGCCA GATGCCGCGG CAGATACTAA GCTAAACGCC TTATCGCTGC AGGGCTTGCA AGGCGCAAGA AATGAGGTCC TCCCACAATA TCAAGTTTCT ATCAAGCCTC AGGGCGAACC TGTGACGCAG ATGCAGGAGA TGATCCATAA ATTCTCGCCC GTGATGCGTC AGCAGCTGGT GGCCATGGTG AGCCAAGGCG TGCAGCAGGC TGAGATTCGC CTGGATCCGC CCGAGCTTGG CCACATGATG GTTCGGGTTC AGGTGCAGGG CGACCAGACT CAGGTGCAGT TTCATGTAAC CCAGACCCAG ACGCGGGATC TGGTTGAGCA AGCCATCCCG CGTCTGCGAG AGCTACTGGC CGAGCAGGGG ATGCAGCTGA CCGATAGTAA CGTCTCTCAA GGCGGCAAAG AGCAGGGCGG CAATGGCGAG CAAGGCGAGG GAGTGGGCCA TGGTCTGTCT GAGATGGATG AAATTTCGGC AGAAGAGAGC CTGTTAGTGT CGAATAACGC AACAAGTTAT CGTTCGGGTA TAGATTATTA CGCGTAA
|
Protein sequence | MPQMTQILLS NVEPGKEKVG VLPSASDAKS TAESKSENKG FSEALAKASG QDEVNSQAKT RHQSQAENVA QRDNTDKADV KQEKAPTQDK ESDDVSNVLA QIHLANKLGD EAEFAADGVI LPPGDADGES SADNELLPTF VKGAKDKVDT EKAALEGIDE LLNPGAGDDH ILPVINPNSL GSEAILAQLP EDALSEVMAQ TGLSKDELTA LPPQMLEGLI HGIAGKNKSG NGELGQAEAL ESDAAKLAAL INDAKQYLSA KASQSQSNLA ATQTEPSQGA GGASQAGLNQ VGLNQNEISQ TGLTSANNAS GVESAVNEKG VKAILGESKV GESKFGEAKL ADAKLAAEQA QNGALKTTSG AEGRDGKAAQ ELLKGANLAV TMSPKAGEMP DAAADTKLNA LSLQGLQGAR NEVLPQYQVS IKPQGEPVTQ MQEMIHKFSP VMRQQLVAMV SQGVQQAEIR LDPPELGHMM VRVQVQGDQT QVQFHVTQTQ TRDLVEQAIP RLRELLAEQG MQLTDSNVSQ GGKEQGGNGE QGEGVGHGLS EMDEISAEES LLVSNNATSY RSGIDYYA
|
| |