Gene Shew_1339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1339 
Symbol 
ID4923777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1550289 
End bp1550735 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content55% 
IMG OID640162880 
Producthypothetical protein 
Protein accessionYP_001093467 
Protein GI127512270 
COG category[S] Function unknown 
COG ID[COG3018] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATATC TAATTAGTGT GTTGCTGCTC GTCCTGAGTG GATGTGCGTC TCAAGACAGA 
TACATTCAAT GGGAAACCCA AGCGCCGGAA AGTTTTCCTA AGTTAACCGC AATCGGTTAT
GCGCCGCTGG CGACTCAGCC GGCGAAAGAG GCATCTCAGC GGGTGTTGAT GGCGATGCAG
GCGTCGAAGA TCGCCGCCTA CCGTGAGCTT GCCGAGCAGG TTTACGGCCA GCAGCTATCG
GCGTCGAGCA GTGTGAAAGA TTGGATGCTT TCCGATGATA ATATTCAGGC CTCGGTGAGC
GGGGTTATCC GCGGCGCTAG AGTGGTGAAG AGCTACCCGG TCGGGGATCA TTATGTGACT
GAGCTGGAGC TCGACTTCCA GCAGGTGTGG GCCTTATACC AACAGCAGAA TCGGCCGCAG
ACGGTGAAGG AAGTGACCTA TTTCTAG
 
Protein sequence
MRYLISVLLL VLSGCASQDR YIQWETQAPE SFPKLTAIGY APLATQPAKE ASQRVLMAMQ 
ASKIAAYREL AEQVYGQQLS ASSSVKDWML SDDNIQASVS GVIRGARVVK SYPVGDHYVT
ELELDFQQVW ALYQQQNRPQ TVKEVTYF