| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1317 |
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| Symbol | |
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| ID | 4920495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1528142 |
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| End bp | 1530622 |
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| Gene Length | 2481 bp |
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| Protein Length | 826 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640162857 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001093445 |
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| Protein GI | 127512248 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2604] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAACA CCCAATCAGA AATATCCAAA ACGTTTGCAA TCAGTCAGTT CAATGAGTAC
TACTTACCCA GTGTAAATAG ACATACCTTT GAAAAGCTGG ACTCCGCTTC TCTTTACAAC
AAGAAATATC AGGACGCTTT TAAGCAAGAA GATACACTGC ACATCATCAT AGGCATGGAT
TCTGGCCTAC TGGCAAACTA TCTCATGTCG CAACCACAGG CAAAAGGCAG CAAATATCTG
TTCGTCGAGC TGGCTGACGT ACTTTCTCTG CTAACCATAG AGATTCCTGA ACACCTCAAA
GATGACATGC AAATCGTTTC AGCGAATGAT TTTCAAGAGG CAATAACGGC CCATGACAAC
AATCTCTACA TAGTTAAGAA ACAATTCAAA ATTCACCGTT CCATTGCCGT AGAAGGCAAC
TATCTCGATG CATATTGCGC ATTGAATGAA CTAGTAGAAA CGAGTGTCGA TCACGAGTAT
TTTGAGCAAA GCATTGGTTT CACACAAAAA ATATTCATCA AGGCACAATT TAAAAACCTC
GCTGAAAATC AAAAGCCTGT ATCAATACTC AAACAAGCCT TTCGCGATAA AACCTGTATA
GTGTTAGGGG GAGGTCCATC CCTAGACGAA CATTTAGAAT GGATTAAGCA AAACAACGAC
GACCTAGTCA TCATCGCCGC ATCGCGAGTC GTAGGCAAAC TGGTCAAACA AGAGATCTCT
GTCGACATAG TTGTCTCCGT CGATCCGCAA ACCCACAGCT TTGATGTCAA TAAAGAGTTT
ATGCAGTTGG AGCATAAGAG TTTATTGATC AACTCTTACC ATGTGGTGCC ACAAATTTTA
GGTCAATGGC AAGGTAGCTC TCTATATACG GGCAATCACC TTCCATGGCT GCACGAGAGA
GATAACCACA ACATAAGATC CATTGGGCCA ACAGTTACCA ACAGCGCCAT AGAGATCGCC
ACGGAAATGG GCTTTAGCCA GGTACTGCTT TGCGGTGTAG ATTTCTGTCA TTCCCAGACA
GGTGTCACCC ATGCTCAAGG GACATATGGC GCCAGTCTGG GGCCTAACAT AGGAGTCATG
TTCGAATGGG TTGAAACAAA TGCCGGCGAC ATGGCTGAAA CACCAATTCA ATTGCTACAC
GCCATTACCT CCCTTGAAGA GGCAATTAGC AATACCCCAG ATACCCAATA CATCAACTTA
TCTCTTGATG CGGCGAAAGT TAAAGGGGTC AACTATCTCG CTACCGACCA AATCGAGATC
CAGCCACTAA CCACAAGCCA ACGCGCTCTA CTTTTACCGC AAAAGCACTG CACTACAACA
AGCGAAAAGC AGCGCTATCT AGAAGACACC TTAACGGAAA CTGAATCTCA CCTAGAGAAA
CTCACCTTGC TTAATGCTGA ATTAAAACAG GCTCATAGCA TCATAGACAA ACTGGAGATT
GCCAAGTCGC CTGAGCGTAT AGCGATTCAA GCGGAGAAGC TCGAAAAACT CGAACAGAGA
ATCAATGAAA AATACCCAGA TCTAGCCAAC CTCATCAAAT TCTATGGCTA CTATGAATTT
TCACATTTCT TCTCTACCAA AAAAGAGCAG GACTGGTCCC AGGAAGATGT CAACAAACAT
ACCCGAATCT ACTACTCGGC ATTTGAGAGC ATTGCCCAAG AGATAGCGCG GCTAATTGAT
GATGCCATCA TACGCCTCCA CTCAAGACTC GAAGAGGAAA AACCAGACTG CGACATAAGT
GCCTTATGTC AGCAATGGCA CAATGATATG CAGTGGGGAC GAGCTATTAT CTGGCAACAG
CAACACCCCC AAGCTTATGA GGCCTTGTCG GCTGAGCAAA AATCGCTTCT TAAGAAGAGT
GAAGAGATCT ATCTTGAACA GTTTGTCGTT AAAGAGTTTA TCGATGATAC AGATGACGCC
CCCGTCCCCT TTATCGAAAA CGCCTTTAAG AAATTACAGA TATTACTGCA CAACAAGCAT
CTGCTGGGTA TCTCCAAAAT TGCACAATAC ACGGCGCCTT TTATTCAAAC TGATCCCGAG
GTTAATCGCC TGCATTTTCT CGCTTTAAGC TATCAATACA TGCTGGAAAA CCAACCCGAG
TTGGCACTAG AAACGCTACA GAAGATCCCT GAGAATGATT TTCAAGAGGC CGAGCGTAAA
CTCGCCATCC AGCTGACTCT GAATCTCAAT AACCTCCCGC TGGCCCTAGA GCATTACGCC
AAGATAATTG AGTACAGCGA CGAGTATCTG CCTCAGTATG CCCATGCGCT GAACTTGAGT
GGCGATCCGC AGGCCGCCCT GGGTGTCTAC CTCGATTACT TGGATAAATA TCCTCAGGAC
ATTCCTGTGA TGCTAAAATT GGGGATCTTT CTGGCCCAAG CGGGTCAGAT TGACGGCGCC
ATCTCCTGTT TCGAAAACGT CCTCATGCTG GATGAAGATA ATCAGGCGGC GCTCAACTAC
CTGGGGCAGC TCAGGCCCTA A
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| Protein sequence | MQNTQSEISK TFAISQFNEY YLPSVNRHTF EKLDSASLYN KKYQDAFKQE DTLHIIIGMD
SGLLANYLMS QPQAKGSKYL FVELADVLSL LTIEIPEHLK DDMQIVSAND FQEAITAHDN
NLYIVKKQFK IHRSIAVEGN YLDAYCALNE LVETSVDHEY FEQSIGFTQK IFIKAQFKNL
AENQKPVSIL KQAFRDKTCI VLGGGPSLDE HLEWIKQNND DLVIIAASRV VGKLVKQEIS
VDIVVSVDPQ THSFDVNKEF MQLEHKSLLI NSYHVVPQIL GQWQGSSLYT GNHLPWLHER
DNHNIRSIGP TVTNSAIEIA TEMGFSQVLL CGVDFCHSQT GVTHAQGTYG ASLGPNIGVM
FEWVETNAGD MAETPIQLLH AITSLEEAIS NTPDTQYINL SLDAAKVKGV NYLATDQIEI
QPLTTSQRAL LLPQKHCTTT SEKQRYLEDT LTETESHLEK LTLLNAELKQ AHSIIDKLEI
AKSPERIAIQ AEKLEKLEQR INEKYPDLAN LIKFYGYYEF SHFFSTKKEQ DWSQEDVNKH
TRIYYSAFES IAQEIARLID DAIIRLHSRL EEEKPDCDIS ALCQQWHNDM QWGRAIIWQQ
QHPQAYEALS AEQKSLLKKS EEIYLEQFVV KEFIDDTDDA PVPFIENAFK KLQILLHNKH
LLGISKIAQY TAPFIQTDPE VNRLHFLALS YQYMLENQPE LALETLQKIP ENDFQEAERK
LAIQLTLNLN NLPLALEHYA KIIEYSDEYL PQYAHALNLS GDPQAALGVY LDYLDKYPQD
IPVMLKLGIF LAQAGQIDGA ISCFENVLML DEDNQAALNY LGQLRP
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