| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1276 |
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| Symbol | |
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| ID | 4920493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1475987 |
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| End bp | 1477339 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162817 |
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| Product | isocitrate lyase |
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| Protein accession | YP_001093405 |
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| Protein GI | 127512208 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2224] Isocitrate lyase |
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| TIGRFAM ID | [TIGR01346] isocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.57065 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTAACAC CTGAGATGGA GAAGATTATG ACTAAGGCAA CTACACAGAT TTCACGTCAA
CAACAGATTG ATGCGATTAA GCAAGATTGG GCTGAAAATC CACGTTGGGC CGGCGTTCGT
CGCCCCTATT CAGCAGAGGA CGTAGTGGCC TTACGCGGTT CGATTGTCCC GGAAAATACC
CTGGCAACCC GCGGCGCCGA GAAGCTATGG CAGCTGGTTA ATGGTGGCGC TAAGAAAGGT
TATGTTAACT CGCTCGGCGC CCTGACCGGT GGTCAGGCGG TACAGCAGGC CAAGGCGGGT
ATTGAGGCCA TCTACCTGTC GGGCTGGCAG GTAGCTGCCG ATGCTAACCT GGCGGGCACC
ATGTACCCAG ATCAGTCGCT TTATCCGGCT AACTCAGTAC CTGCAGTGGT TCAGCGCATC
AACAACTCGT TCCGCCGCGC CGACCAGATC CAGTGGAGCA ACGAGATCGA CCCACAAGAT
GAGCGCTACA CAGACTACTT CTTGCCTATC GTGGCCGATG CCGAAGCCGG TTTTGGTGGT
GTACTTAACG CCTACGAGCT GATGAAGAAC ATGATCGATG CCGGCGCGGC GGGTGTGCAC
TTTGAAGATC AGCTAGCCTC GGTGAAGAAG TGTGGCCACA TGGGCGGTAA GGTGTTGGTG
CCGACCCAAG AAGCGGTACA GAAACTAGTT TCGGCGCGTT TGGCTGCCGA CGTGAGCGGC
GTACCAACTC TGGTTATCGC CCGAACCGAT GCGAACGCTG CGGATCTGCT GACCTCTGAT
TGCGACCCTT ATGATCGCGA CTTCATCACC GGCGAGCGCA CTTCAGAAGG TTTCTACCGT
GTGAATGCGG GCATTGACCA GGCTATCTCT CGTGGTCTGG CCTACGCCCC ATACGCAGAT
CTTATCTGGT GTGAGACGGC TAAGCCGGAT CTTGAAGAGG CGCGTCGCTT TGCCGAGGCT
ATCCATGCGC AATACCCAGA TCAGCTGCTG GCCTACAACT GTTCACCTTC TTTCAACTGG
AAGAAGAACC TGGATGACGC CACCATCGCC CGCTTCCAGC AGGAACTGTC GGACATGGGC
TACAAGTACC AGTTCATCAC CTTAGCCGGT ATTCACAACA TGTGGTACAA CATGTTCGAC
CTCGCCTATG ACTATGCGCG TGGTGAAGGC ATGAAGCACT ATGTCGAGAA GGTACAGGAA
GTCGAATTCG CCGCGGCGAA GAAAGGCTAC ACCTTCGTGG CGCACCAGCA AGAGGTGGGT
ACAGGCTACT TCGATAAGGT GACCAATGTG ATCCAAGGCG GTGAGTCTTC GGTCACGGCG
CTGACAGGCT CTACCGAAGA GGAGCAGTTC TAA
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| Protein sequence | MLTPEMEKIM TKATTQISRQ QQIDAIKQDW AENPRWAGVR RPYSAEDVVA LRGSIVPENT
LATRGAEKLW QLVNGGAKKG YVNSLGALTG GQAVQQAKAG IEAIYLSGWQ VAADANLAGT
MYPDQSLYPA NSVPAVVQRI NNSFRRADQI QWSNEIDPQD ERYTDYFLPI VADAEAGFGG
VLNAYELMKN MIDAGAAGVH FEDQLASVKK CGHMGGKVLV PTQEAVQKLV SARLAADVSG
VPTLVIARTD ANAADLLTSD CDPYDRDFIT GERTSEGFYR VNAGIDQAIS RGLAYAPYAD
LIWCETAKPD LEEARRFAEA IHAQYPDQLL AYNCSPSFNW KKNLDDATIA RFQQELSDMG
YKYQFITLAG IHNMWYNMFD LAYDYARGEG MKHYVEKVQE VEFAAAKKGY TFVAHQQEVG
TGYFDKVTNV IQGGESSVTA LTGSTEEEQF
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