| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1243 |
|---|
| Symbol | |
|---|
| ID | 4921293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1441813 |
|---|
| End bp | 1442898 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640162783 |
|---|
| Product | peptidyl-Lys metalloendopeptidase |
|---|
| Protein accession | YP_001093372 |
|---|
| Protein GI | 127512175 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000553843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC TATTCAAATT ATCAACACTC GCTATTGCCA CCACCTTACT GAGTCAATCA
GCCCTCGCCG AAGGGATCGC CGCTAAACTG CAGATGAGCC AAGACAGCTT CAGCAGCGAT
CAGGACGTGA TGGTCACCCT AACCCTGACC AACGAAGCAA ACGTTCCGGT GAAACTACTC
AAGTGGTTTA CTGCGGCAGA CGGTGTTGAA GAGTCGCTAT TTAAAGTTAC CGCTGATGGT
CAAGAGCGCC CTTACCTTGG TGCCCACTAC AAGCGTCCAG CACCAAGCCA TAAAGACTAC
ATCAAGCTAA AATCCGGTGA GAGCATCTCT TATCAGGTAG AGCTATCGTC ACTGTATGAC
ATGTCATCCA CGGCTAACTA TGAGATCAGC TATGATGTCA GCTCTATGCA GCTGTTTGCG
CCAAACCCAG GTCAGGCTAA GAAACTGGCT CGCCTTGGCG TAGAAGGCAT ACACTCTGCC
CCAGCGAGCT TCTACCTGGA AGGCCGCGAA TTTAAAGGCG GCGCTAACAA GGGCAAGCCA
GGCACCGGCG ATGGTGGCGG CACCACACCT GACGGCATCT CTTTCACCGG TCGTTGCAGC
AACTCACAGC AGAGTGATAT CCTTGCCGGC CTAGCCGCGG CTAAGACAAT GTCAGCCGAC
GCTAACCAGC ACCTGGCCAC CGCCAGCAGC AACTCACAGC GTTACAGCAC CTGGTTCGGC
GCTTACAGCT CGTCTCGCTG GAACACGGTA AGCAACAACT TCAGCAAGAT CGATAGCGCG
CTCAACAACG AGCCACTGAC CTTCGACTGT AGCTGTAAGA AGCAATACTA CGCTTATGTT
TACCCAACTC AGCCATACAA GATCTACATG TGTAATGCCT TCTGGACAGC CCCAACGTCG
GGTACTGACT CTAAGGGCGG CACCATCATC CATGAAACCA GCCACTTCAA CGTAGTAGCG
GGCACTGATG ATATTGTTTA CGGTCAGAGC GGTGCTAAGT CACTGGCGAT CAGCGATCCT
TCACAGGCGA TTCAAAATGC TGACAGCCAT GAATATTTTG CTGAAAACAC GCCTAACTTA
AACTAA
|
|---|
| Protein sequence | MSKLFKLSTL AIATTLLSQS ALAEGIAAKL QMSQDSFSSD QDVMVTLTLT NEANVPVKLL
KWFTAADGVE ESLFKVTADG QERPYLGAHY KRPAPSHKDY IKLKSGESIS YQVELSSLYD
MSSTANYEIS YDVSSMQLFA PNPGQAKKLA RLGVEGIHSA PASFYLEGRE FKGGANKGKP
GTGDGGGTTP DGISFTGRCS NSQQSDILAG LAAAKTMSAD ANQHLATASS NSQRYSTWFG
AYSSSRWNTV SNNFSKIDSA LNNEPLTFDC SCKKQYYAYV YPTQPYKIYM CNAFWTAPTS
GTDSKGGTII HETSHFNVVA GTDDIVYGQS GAKSLAISDP SQAIQNADSH EYFAENTPNL
N
|
|---|
| |