Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1231 |
Symbol | |
ID | 4923905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1430464 |
End bp | 1431057 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162771 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001093360 |
Protein GI | 127512163 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAACAGG TATCTGAAGT AACTGCAGAT AGTGATCAAA TCCTGATGGC GCAATACGCC CAGGGAGATC AAGGTGCCTT TGAGCAGCTT TATCATAAAC ACAAGGGCGG CCTGTATCGC TATTTCAAGC GTCAACTAGG CGACAGTGCC CTGGCCGAAG ATCTCTATCA AGAGACCTGG AGCCGGGTGA TTAAGGCCGC CGCAGGCTAT GAGCAGCGCG CCAAGTTTAC CACTTGGCTC TATCGCATCG CCCATAACTT GCTGATCGAT CATGTCAGGG CGCTGAAACC TGTGGACAGC CTAAGCGACC CGGCAGGCGA GGAGCAGTCC TTGGAGGCTG TCATCCCCAG CGATGAGAGC GGCCCGGACG GTCGGCTAGA GGATGAGCAG AAGGCCTTGC TCTTAAAGCA TTGCATCAGC CTTCTGCCCC ATGTGCAGAA AGAAGCCTTT CTGCTGAATG TGGAGATGGG ATTTACCGCG GCGGCGATAG GTGAGATCGC CGGGGTTGGC ATGGAGGCCA CTAAGAGTCG AATTCGTTAT GCTAATCAGG CGCTCAAGGC CTGTGTGCAA CAGAAAATGG CAGGAGCAGT CTAA
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Protein sequence | MEQVSEVTAD SDQILMAQYA QGDQGAFEQL YHKHKGGLYR YFKRQLGDSA LAEDLYQETW SRVIKAAAGY EQRAKFTTWL YRIAHNLLID HVRALKPVDS LSDPAGEEQS LEAVIPSDES GPDGRLEDEQ KALLLKHCIS LLPHVQKEAF LLNVEMGFTA AAIGEIAGVG MEATKSRIRY ANQALKACVQ QKMAGAV
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