Gene Shew_1231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1231 
Symbol 
ID4923905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1430464 
End bp1431057 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content55% 
IMG OID640162771 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001093360 
Protein GI127512163 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAACAGG TATCTGAAGT AACTGCAGAT AGTGATCAAA TCCTGATGGC GCAATACGCC 
CAGGGAGATC AAGGTGCCTT TGAGCAGCTT TATCATAAAC ACAAGGGCGG CCTGTATCGC
TATTTCAAGC GTCAACTAGG CGACAGTGCC CTGGCCGAAG ATCTCTATCA AGAGACCTGG
AGCCGGGTGA TTAAGGCCGC CGCAGGCTAT GAGCAGCGCG CCAAGTTTAC CACTTGGCTC
TATCGCATCG CCCATAACTT GCTGATCGAT CATGTCAGGG CGCTGAAACC TGTGGACAGC
CTAAGCGACC CGGCAGGCGA GGAGCAGTCC TTGGAGGCTG TCATCCCCAG CGATGAGAGC
GGCCCGGACG GTCGGCTAGA GGATGAGCAG AAGGCCTTGC TCTTAAAGCA TTGCATCAGC
CTTCTGCCCC ATGTGCAGAA AGAAGCCTTT CTGCTGAATG TGGAGATGGG ATTTACCGCG
GCGGCGATAG GTGAGATCGC CGGGGTTGGC ATGGAGGCCA CTAAGAGTCG AATTCGTTAT
GCTAATCAGG CGCTCAAGGC CTGTGTGCAA CAGAAAATGG CAGGAGCAGT CTAA
 
Protein sequence
MEQVSEVTAD SDQILMAQYA QGDQGAFEQL YHKHKGGLYR YFKRQLGDSA LAEDLYQETW 
SRVIKAAAGY EQRAKFTTWL YRIAHNLLID HVRALKPVDS LSDPAGEEQS LEAVIPSDES
GPDGRLEDEQ KALLLKHCIS LLPHVQKEAF LLNVEMGFTA AAIGEIAGVG MEATKSRIRY
ANQALKACVQ QKMAGAV