| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1226 |
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| Symbol | |
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| ID | 4924332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1423434 |
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| End bp | 1426268 |
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| Gene Length | 2835 bp |
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| Protein Length | 944 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162766 |
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| Product | peptidase M16 domain-containing protein |
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| Protein accession | YP_001093355 |
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| Protein GI | 127512158 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0612] Predicted Zn-dependent peptidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT GGATATTGGC TGCGGCGATC ACGGCCGCGC TAAGCGCCTG TGCCAACGCA
CCGGCAAACG TGGCGCTGCC TCAGGGCGTT TCGCTGATCG AAAATGTAGC CCTGGCCGAG
TCGGGCGTCG GCATTCCCTA CAAGAAATAT CAACTGGCCA ACGGCCTGAC GGTGATCCTG
CATCAGGATC ATTCCGATCC TCTGGTGCAT GTGGATGTTA CCTATCATGT GGGCTCGGCA
AGAGAGCTAC CAGGACGCTC GGGATTTGCG CACTTATTCG AGCACATGAT GTTCCAAGGC
TCAGAGCATG TGGGCGACGA GCAGCATTTC AAGACGGTAA CCGAGGCCGG TGGCACACTT
AACGGCACCA CCAACACAGA CCGCACCAAC TATTTCGAGA CTGTGCCCAG CAATCAGCTG
GAGAAGATGC TCTGGCTGGA GTCGGATCGC ATGGGGTATT TCTTGCCGGC CCTGACCGAC
AACAAGTTCG AGGTGCAGCG CGAGACGGTG AAGAACGAGC GCGCTCAGCG TATCGACAAT
CAGCCCTATG GTCGCATGAA CGAGCGCTTC AATCAGGCCT TCTACCCCAG CGGGCACCAG
TATTCCTGGC CTGTCATCGG CTGGCCAGAG GATCTCAATC GTGCCCAGCT CGATGATGTG
AAACACTTCT TCCAGCGTTG GTACGGCCCG AACAACGCCA CACTCACCAT AGGCGGCGAT
TTCGACGAGA TGCAGACCCT GGCCTGGGTG AACAAATATT TTGGTGAGAT CCCAAGAGGC
CCAGAGGTGA AGCCTGAGGC CAAGACGCTG GTCACGTTAG ATAAGACCCG CTACATCTCC
ATGGAAGACA GGGTGCACCT GCCGCTGCTG CGCATGGCAT TTCCAACCGT TTACGCCAGC
CACGAAGATG AAGCGGCGCT GGATCTGCTG GCCAACATCA TCGGCGGCGG ACCTACCTCG
CTGGTGTACA AGAACCTGGT GAAGGATGGC TATGCTGTGC AGGCCGGCGT GAGCCACCCT
TGTCAGGAGC TGGCCTGTCA GTTCTCTATC TATGCCCTGG CAAACCCTGC CAGAGGTGGT
CAGCTGGCGG ATGTCGAGCG TCGTATTCGC GAGTCTATCG CCGAGTTTGA ACAGCGCGGC
GTGACAGATG ACGACCTGCA GAAAGTTAAG GTGCAGTTTG AGGCAAACAC CATCTTCGGC
TTGCAGAGCG TCAAGGGCAA GGTATCGACC CTGGCCCTGA ATCAGACCTT CTTCGGTAAT
CCCGACATGA TAGCCCACGA CCTCAAGCGC TACGCCAACG TCACCAAGGA AGATGTGATG
CGGGTGTTTA ATACCTACAT CAAGGGCAAG CCGTCTGTGG TGATGAGTGT GGTGCCTCAG
GGACAACAGC AGCTGATCGC CCACGAAGAT AACTTTGTCG CGCCTGCGCC GCGGGTGGCC
GCCGAGGCCG TGACCGGCAT GGTTGATGTG GCCAAGGCTG GTAGCAGCTT CGATCGCAGC
GTGATGCCGA GTGCCCAACA GGCACCTGTT ATCACGGCGC CAAGCCTTTG GACAGACAAG
CTGGCCAACG GCATTGAGGT GATGGGTACA GAGAGCGATG AGACCCCAAC CGTCGAGCTG
CTCATCTATC TTAACGGCGG CCATCGCCTG ACCGATGTGA AGCAGGCGGG ATTGGCCGGT
TTGACCGCGG CCATGCTGAA CGAATCCAGC GACAAGCGCA GCACAGAAGA GCTGGCCCAG
GCGCTGGAGA TGCTCGGCAG CAGCGTCAGT TTCGGCAGCA GCATCTATCA GAGCTATATC
AAGGTTTCGG CCCTGACTTC GCATCTGGAT GAGACTCTGG CTATCGTCGA GGAGAAGCTG
TTCCACCCTG GCTTTAAAGA GAGCGATTTT GCCCGGGTGC AGCAACAACA CCTGCAGAGC
CTGCAACACA TGCAGTCGGA CCCTAACTAT GTCGCCGACA GTCAGTTCGA TGCCTTGCTC
TACGGCAAAG ACACCGCCCT TGGGGTGAGT GAGATGGGCA CGCCCGCTAG CGTGTCTCAG
TTGACCCTGG ATGATGTCAA AGCCTTCTAC AACAAGCAGT TCCGCGCCGG TAACGCCCAG
ATAGTGGCCG TGACTAACCT GTCCAAGGCC CAGCTGATGC CTAAGCTGAA GGGGCTGGCT
CAGTGGCAAG GGGAGGCGAC GCCATTGCCA AGTTTGGCCG CCATGCCAGC CTTAGATGCC
GGCACCGTCT ATATTCTGGA CAAGCCGGGC GCGGCCCAGT CGGTGATCAA AATTGGTAAG
CGCGCTATGC CCTATGATGC CACCGGCGAG TTCTTCAAAT CATATTTGAT GAACTATCCA
CTGGGCGGCG CCTTTAACAG CCGCATCAAC CTCAACCTGC GTGAAGACAA GGGCTACACC
TATGGTGCCC GCAGCTACTT CAGCGGCGGC AGCGAGCTTG GTCTGTTCGA GGCTTCGGCC
AGCGTGCGCA GTGATGTCAC CGCCAAGGCG CTCACTGAGT TTGCCAAGGA GATCAACGCC
TATCAGGCTG AAGGGATGAC AGACAAGGAA CTGGCCTTCC TGCGCAGCTC TATCTCTCAG
GGCCAGGCAC TGGATTATGA GACGCCATAC CAGAAGGCGG GCTTCATGCG TAAGATCCAG
CGCTACAAGC TTGCCGCCGA TTACACCCAG CAGCAGGCCG ATATCATCAA GGCCGTTGAC
AAGGATGAGC TGAACCAGTT GGCGAAGGAG AAGCTGAACC TGGACAAGAT GATCGTGTTG
ATTGTCGGCG ACAGGGCGAA GATCGAACAG GAGATTAAAG CCCTGGGCTA CCAGGTGAAA
AATTTGCAGT TGTAA
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| Protein sequence | MKKWILAAAI TAALSACANA PANVALPQGV SLIENVALAE SGVGIPYKKY QLANGLTVIL
HQDHSDPLVH VDVTYHVGSA RELPGRSGFA HLFEHMMFQG SEHVGDEQHF KTVTEAGGTL
NGTTNTDRTN YFETVPSNQL EKMLWLESDR MGYFLPALTD NKFEVQRETV KNERAQRIDN
QPYGRMNERF NQAFYPSGHQ YSWPVIGWPE DLNRAQLDDV KHFFQRWYGP NNATLTIGGD
FDEMQTLAWV NKYFGEIPRG PEVKPEAKTL VTLDKTRYIS MEDRVHLPLL RMAFPTVYAS
HEDEAALDLL ANIIGGGPTS LVYKNLVKDG YAVQAGVSHP CQELACQFSI YALANPARGG
QLADVERRIR ESIAEFEQRG VTDDDLQKVK VQFEANTIFG LQSVKGKVST LALNQTFFGN
PDMIAHDLKR YANVTKEDVM RVFNTYIKGK PSVVMSVVPQ GQQQLIAHED NFVAPAPRVA
AEAVTGMVDV AKAGSSFDRS VMPSAQQAPV ITAPSLWTDK LANGIEVMGT ESDETPTVEL
LIYLNGGHRL TDVKQAGLAG LTAAMLNESS DKRSTEELAQ ALEMLGSSVS FGSSIYQSYI
KVSALTSHLD ETLAIVEEKL FHPGFKESDF ARVQQQHLQS LQHMQSDPNY VADSQFDALL
YGKDTALGVS EMGTPASVSQ LTLDDVKAFY NKQFRAGNAQ IVAVTNLSKA QLMPKLKGLA
QWQGEATPLP SLAAMPALDA GTVYILDKPG AAQSVIKIGK RAMPYDATGE FFKSYLMNYP
LGGAFNSRIN LNLREDKGYT YGARSYFSGG SELGLFEASA SVRSDVTAKA LTEFAKEINA
YQAEGMTDKE LAFLRSSISQ GQALDYETPY QKAGFMRKIQ RYKLAADYTQ QQADIIKAVD
KDELNQLAKE KLNLDKMIVL IVGDRAKIEQ EIKALGYQVK NLQL
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