| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1220 |
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| Symbol | |
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| ID | 4921314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1417554 |
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| End bp | 1419359 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162760 |
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| Product | oxaloacetate decarboxylase |
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| Protein accession | YP_001093349 |
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| Protein GI | 127512152 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
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| TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0185712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC CACTTGCATT AACCGACGTC GTCCTGCGCG ACGCGCATCA ATCGATTCTT
GCCACGCGTC TTCGTATCGA CGACATGCTT CCTATCGCCC CTTTACTCGA CAAGGTGGGC
TTCTGGTCGC TGGAATCCTG GGGCGGTGCT ACTTTTGACG CCTGTATCCG TTATCTGGGG
GAGGATCCCT GGGAACGCAT TCGCGAGCTT AAGAAGGCCA TGCCCAATAC GCCGCAGCAG
ATGTTACTTA GGGGACAGAA CCTGCTGGGC TATCGCCACT ATGGTGATGA CCTGGTGCAT
AGGTTTGTCG AGCGCGCGCA TCAAAATGGT GTGGACGTGT TCCGTATCTT CGATGCCATG
AATGATGTGC GTAACCTAGA GACGGCGGTT AAGTCTGTGG TCGAGGTTGG CGGTCACGCC
CAGGGCACCA TCTCCTACAC CACAAGTCCG GTACACACCT TAGATACTTG GGTGGACATG
GCTAAGCGTC TGGAAGATAT GGGCTGTCAC TCGCTCTGTA TCAAGGATAT GGCCGGCCTG
CTCAAACCTT TCGATGCCTT CGATCTCATC AGCCAGCTCA AGGCGCAGAC TAACCTGATC
ATCTCTATGC AGTGCCACGC CACTACGGGC CTGAGTACGG CGACCTATCA AAAGGCGATT
GAAGCTGGCA TCGACGTGCT CGACACCGCT ATCTCTTCGA TGAGCCAAAC CTATGGTCAT
AGCGCTACCG AGACCTTGGT GGCCATGGTG GAAGATACCG ACAGGGCCAC GGGTTACGAC
ATGGCGCTGC TCGAGCAGAT CGCCGCCTAC TTCAGAGAGG TGCGTAAGAA ATATGTTGCC
TTCGAAGGGG AGCTCAAGGG GATCGATTCG CGTATTCTGC GCGCCCAGGT GCCAGGTGGC
ATGCTCACCA ACATGGAGAA TCAACTGAGA GAGCAGGGCG CCGCCGACAA GTTGGATCTT
GTGCTCGAAG AGATCCCTAA GGTGCGTGAA GATCTTGGCT TTATTCCGTT GGTTACTCCG
ACATCACAGA TCGTCGGTAC CCAGGCGGTG ATCAACGTGC TCACAGGTGA GCGTTATAAG
TCGCTCACCA AGGAAACCGA AGGTGTGCTC AAGGGCGAAT ATGGCGCCAC GCCTGCGCCG
GTAAATCGTG AGCTACAGGC TCGCGTGCTG GCCGGCGCTG AGGCGATCTG CTGTCGCCCC
GCAGACCTGC TGCCCGCCGA GCTGGACAGC CTGAGGGCCG AACTAAGCGA GAAGGCCGCC
AGCGAGCAGA TAAGCCTGGC AGCTGAGCTG GACGATGATG TCTTGACCTA TGCGCTCTTC
CCGCAGATCG GCCTTAAGTT CCTCAAGAAC CGTGATAATC CGGATGCGTT CGAGCCTAAG
CCAGAGGCAC CTCAAGCCAC AACTCAAGCA GCGACTGTAA GCGAGCCAGC TAGCGCGCGT
CAGCCACAGG GTAAGGAGAC CTATACGGTC AATGTGCAAG GCCAGAGTTT CGTGGTGGAG
GTCTCTCCCG GCGGCGATAT CAGTCAGATA GTGCCGAGCG AGAATGTGGT GCCCTTTGCG
GCGCCAGAGC CCGTCGCACC CGTTGTAGGC GAAGGCTCGC CCATGAACGC ACCCTTGTCG
GGCAACATCT TCAAGGTGAA TGTGCAGCCA GGGGATGCCG TCAAGGCGGG GGATGTGGTG
ATCATCCTCG AGGCGATGAA GATGGAGACA GAGATCCGCG CCGAATCCGA TGGCGTAGTC
GCCAAGGTGT GGGTCAAAGA AGGCGACTCT GTTGCCGTTG GCAATCAATT GCTTGCCATT
GCATAG
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| Protein sequence | MSKPLALTDV VLRDAHQSIL ATRLRIDDML PIAPLLDKVG FWSLESWGGA TFDACIRYLG
EDPWERIREL KKAMPNTPQQ MLLRGQNLLG YRHYGDDLVH RFVERAHQNG VDVFRIFDAM
NDVRNLETAV KSVVEVGGHA QGTISYTTSP VHTLDTWVDM AKRLEDMGCH SLCIKDMAGL
LKPFDAFDLI SQLKAQTNLI ISMQCHATTG LSTATYQKAI EAGIDVLDTA ISSMSQTYGH
SATETLVAMV EDTDRATGYD MALLEQIAAY FREVRKKYVA FEGELKGIDS RILRAQVPGG
MLTNMENQLR EQGAADKLDL VLEEIPKVRE DLGFIPLVTP TSQIVGTQAV INVLTGERYK
SLTKETEGVL KGEYGATPAP VNRELQARVL AGAEAICCRP ADLLPAELDS LRAELSEKAA
SEQISLAAEL DDDVLTYALF PQIGLKFLKN RDNPDAFEPK PEAPQATTQA ATVSEPASAR
QPQGKETYTV NVQGQSFVVE VSPGGDISQI VPSENVVPFA APEPVAPVVG EGSPMNAPLS
GNIFKVNVQP GDAVKAGDVV IILEAMKMET EIRAESDGVV AKVWVKEGDS VAVGNQLLAI
A
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