Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1218 |
Symbol | |
ID | 4923000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1415710 |
End bp | 1415907 |
Gene Length | 198 bp |
Protein Length | 65 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640162752 |
Product | carbon storage regulator |
Protein accession | YP_001093347 |
Protein GI | 127512150 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) |
TIGRFAM ID | [TIGR00202] carbon storage regulator (csrA) |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000555934 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGATAT TGACTCGTCG TGTTGGTGAA ACACTGATGA TTGGTGATGA AGTTACTGTC ACCGTTTTAG GCGTAAAGGG TAATCAAGTT CGTATTGGTG TTAATGCACC AAAAGAAGTT TCAGTTCATC GTGAAGAGAT TTATCAGCGT ATTCAGTCTG AAAAGTCAGG TAGCTCTTCT GAAGGCGGCA ATTTTTAA
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Protein sequence | MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQSEKSGSSS EGGNF
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