| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1213 |
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| Symbol | |
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| ID | 4921935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1406809 |
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| End bp | 1407783 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640162747 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001093342 |
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| Protein GI | 127512145 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTCGTA AACAATCTAC CGCCGTGGCG GAGCCCTTAG TGGACTTGTC TAAGAATGAG
TCTGATCTAT CAGTGACCAA CAGCAAGGAG GTTTTGAAAG ACGCAGAACT AGAACAGCAA
GTACAAGATG ACTTACAAAA GAACTTAGAT GCCACTCAGC TGTATTTAAG TGAAATTGGA
TTTTCCCCCC TATTGAGTGC GGAAGAGGAG GTTTATTTCT CACGTAAGGC CCTAAAAGGC
TGTGAAAAAT CTCGCAACCG TATGATTGAG AGTAATCTCA GACTCGTCGT AAAAATTGCA
CGTCGTTATA ACAATCGTGG TTTAGCCTTA TTGGATCTGA TTGAAGAAGG TAACTTAGGT
TTGATCCGCG CCGTCGAAAA GTTCGATCCC GAACGCGGCT TCCGTTTTTC AACCTATGCC
ACATGGTGGA TCCGCCAGAC CATAGAACGT GCCATCATGA ACCAAACCCG TACCATTCGC
CTGCCTATTC ATGTGGTGAA GGAGCTCAAT GTTTACCTTC GTACCGCCAG GGAACTCGCG
CACAAGCTAG ATCATGAGCC AACCGCAGAA GAGATCGCCG AGCAGTTAGA CCTGCCAAGT
AGCGATGTCA GTAAGATGCT CAAGCTTAAC GAGCGTATCA CCTCGGTCGA TACCCCACTG
GGTGGCGACA ACGACAAGGC GCTGCTGGAT GTATTAGCCG ATGACGATTG TGTGGGCCCG
GATTACAAGG TGCAAGACGA CGATATGTCT AAGTCTGTTG TGCGCTGGCT CGACGAACTG
AACAGCAAGC AGAGAGAAGT ACTTGCCCGT CGTTTCGGTC TGCTTGGCTA TGAGCCATCG
ACCCTGGAAA ATGTCGGTAA AGAGATAGGT CTGACTAGAG AAAGAGTACG CCAAATTCAG
GTGGAAGCCC TGAAGCGGCT TCGAGATCTG CTTAGTGCTC AAGGACTATC GGTAGAAGCT
ATCTTCAGAG TGTAA
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| Protein sequence | MGRKQSTAVA EPLVDLSKNE SDLSVTNSKE VLKDAELEQQ VQDDLQKNLD ATQLYLSEIG
FSPLLSAEEE VYFSRKALKG CEKSRNRMIE SNLRLVVKIA RRYNNRGLAL LDLIEEGNLG
LIRAVEKFDP ERGFRFSTYA TWWIRQTIER AIMNQTRTIR LPIHVVKELN VYLRTARELA
HKLDHEPTAE EIAEQLDLPS SDVSKMLKLN ERITSVDTPL GGDNDKALLD VLADDDCVGP
DYKVQDDDMS KSVVRWLDEL NSKQREVLAR RFGLLGYEPS TLENVGKEIG LTRERVRQIQ
VEALKRLRDL LSAQGLSVEA IFRV
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