| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1207 |
|---|
| Symbol | ispD |
|---|
| ID | 4921260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1402081 |
|---|
| End bp | 1402809 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162741 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_001093336 |
|---|
| Protein GI | 127512139 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000594918 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGTC GCATACAAGA GCTGGTTGCT ATTGTGCCCG CCGCCGGGAT CGGCGCGCGA
ATGGGCGCCG AGATCCCCAA GCAATATCTG ATGTTAAATC ATCAACCTAT CCTGGCGCAC
ACCCTAGATC GCCTGCTGGA ACATCCACGC ATCGACAAGG TGATTATTGC CCTAAGCCCT
GAAGATTCCC ACTTCGCCAA GCTGAGCCAG GCGAGCCATC CTAAATTGAT GACAGTTATC
GGCGGTAAAG AGCGCGCCGA TTCTGTGCTA AGCGCCCTCA AGGTCGCATC TCAATCTGCC
TGGGCGCTTG TGCATGACGC GGCCCGTCCC TGCTTAAGTG CGGCCGATAT CGATAAGCTT
ATCGCCGCCT GTGAGACAGA AGAAGGCCAT CAGCAGGGCG CTATCCTCGC CATGCCGGTA
CGCGACACCA TGAAGCGTTC GGGCAAAGGC GGCGCGATAC AAGAGACGGT ATGCCGGGAG
AATCTCTGGC ACGCGCTCAC CCCCCAGCTA TTTCCCGTGA TCAGTCTCAA GCAGAATCTA
GCTGATGCCC TGGCGGCGCA GGTTGCCATT ACCGATGAGG CCTCGGCGAT GGAGTGGGCC
GGTGGCCAGC CGCTGTTGGT AAGCGGACGA TTTGACAACA TCAAGGTGAC CCATCCAGAG
GATCTGCAAC TGGCGGCGCT CTATCTGCAA GCGGCCGCCA GTGACCCCAA TTCCAGTACA
GGTGAATGA
|
|---|
| Protein sequence | MISRIQELVA IVPAAGIGAR MGAEIPKQYL MLNHQPILAH TLDRLLEHPR IDKVIIALSP
EDSHFAKLSQ ASHPKLMTVI GGKERADSVL SALKVASQSA WALVHDAARP CLSAADIDKL
IAACETEEGH QQGAILAMPV RDTMKRSGKG GAIQETVCRE NLWHALTPQL FPVISLKQNL
ADALAAQVAI TDEASAMEWA GGQPLLVSGR FDNIKVTHPE DLQLAALYLQ AAASDPNSST
GE
|
|---|
| |