Gene Shew_1205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1205 
Symboleno 
ID4921836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1400342 
End bp1401637 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content52% 
IMG OID640162739 
Productphosphopyruvate hydratase 
Protein accessionYP_001093334 
Protein GI127512137 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0148] Enolase 
TIGRFAM ID[TIGR01060] phosphopyruvate hydratase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000056862 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAAAA TTATCAATGT CATTGGTCGC GAGATCATGG ATTCACGCGG TAACCCAACG 
GTTGAAGCGG AAGTGCATCT AGATGGCGGT TTCGTAGGCA TGGCAGCCGC TCCATCAGGC
GCATCTACCG GTAGCCGCGA AGCACTAGAG CTGCGTGATG GTGACAAGAG CCGTTACATG
GGTAAAGGCG TTTTGACCGC TGTTGCTAAC ATCAATGGTC AGATCCGTGA TGCCCTAATG
GGTAAAGATG CGACGGCGCA AGCCGAGCTG GATCAGATCA TGATCGACCT AGATGGCACT
GAAAACAAAG ACAAGCTGGG CGCTAACGCT ATCTTGGCCG TGTCTCTGGC TGCCGCTAAA
GCCGCTGCTG CTTTCAAAGG CATGCCGCTG TACGCGCACA TCGCCGAGCT AAACGGTACT
CCTGGCCAGT ACTCTATGCC TGTGCCTATG ATGAACATCC TTAACGGTGG TGAGCACGCC
GACAACAACG TTGATATCCA AGAGTTCATG GTTCAGCCTG TTGGTGCTAA GAGCTTCCGT
GAAGCGCTAC GCATGGGCGC AGAGATCTTC CACAACTTGA AGAAGGTGTT GCAAGAGAAG
GGTCTTAACA CTGCAGTGGG TGATGAAGGT GGTTTCGCAC CAAACTTGGC CTCTAACGCC
GATGCACTGG CGGTTATCAA GGTTGCGGTA GAAAAAGCCG GTTACAAGCT GGGTGAAGAC
GTGACACTGG CCCTTGACTG TGCAGCCTCT GAATTCTACA AAGACGGTCA ATATGACTTG
TCTGGCGAAG GCAAGGTATT TGACTCAAAC GGTTTCTCTG ACTTCCTGAA GTCTCTGACC
GAAGAGTACC CAATCGTGTC TATCGAAGAT GGCTTGGACG AGTCAGATTG GGATGGCTGG
GCTTACCAGA CTCAAATCCT GGGCGACAAG ATCCAACTAG TAGGTGACGA TCTGTTCGTA
ACCAACACTA AGATCCTCAG CCGCGGTATC GAGAACAAGA TCGCTAACTC TATCCTGATC
AAGTTCAACC AAATTGGTTC TCTGACCGAG ACCCTGGCGG CTATCCGCAT GGCGAAAGAC
GCCGGCTACA CTGTCGTTAT TTCTCACCGT AGCGGCGAGA CAGAAGATGC GACCATCGCT
GATCTGGCGG TAGCGACTGC GGCTGGTCAA ATCAAGACGG GTTCTCTGTG CCGAAGTGAC
CGTGTTGCTA AGTACAACCA ACTGCTACGT ATCGAAGAGC AGTTAGGTGA AAAAGCACCT
TACAAGGGTC GTAGCGAGAT CAAAGGCCAA GCATAA
 
Protein sequence
MAKIINVIGR EIMDSRGNPT VEAEVHLDGG FVGMAAAPSG ASTGSREALE LRDGDKSRYM 
GKGVLTAVAN INGQIRDALM GKDATAQAEL DQIMIDLDGT ENKDKLGANA ILAVSLAAAK
AAAAFKGMPL YAHIAELNGT PGQYSMPVPM MNILNGGEHA DNNVDIQEFM VQPVGAKSFR
EALRMGAEIF HNLKKVLQEK GLNTAVGDEG GFAPNLASNA DALAVIKVAV EKAGYKLGED
VTLALDCAAS EFYKDGQYDL SGEGKVFDSN GFSDFLKSLT EEYPIVSIED GLDESDWDGW
AYQTQILGDK IQLVGDDLFV TNTKILSRGI ENKIANSILI KFNQIGSLTE TLAAIRMAKD
AGYTVVISHR SGETEDATIA DLAVATAAGQ IKTGSLCRSD RVAKYNQLLR IEEQLGEKAP
YKGRSEIKGQ A