| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1186 |
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| Symbol | nrdR |
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| ID | 4923652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1379008 |
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| End bp | 1379481 |
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| Gene Length | 474 bp |
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| Protein Length | 157 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640162720 |
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| Product | transcriptional regulator NrdR |
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| Protein accession | YP_001093315 |
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| Protein GI | 127512118 |
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| COG category | [K] Transcription |
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| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
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| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.526679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.888378 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATTGTC CGTTTTGCAG CGCAACCGAC ACTAAGGTGA TCGATTCTCG TCTGGTGGCC
GATGGTCATC AAGTACGTCG TCGCCGCGAG TGTCTACTTT GCCACGAGAG ATTTACCACC
TTCGAAGGCG CCGAACTGGT GATGCCGCGT GTGGTTAAAC AAGATGGTAG CCGCCAACCC
TTCGACGAAG ACAAGCTGCG CGGCGGCATG CTGAGGGCGG TAGAGAAACG CCCCGTGTCG
ATGGACGAGA TAGAGCAGGC GCTAAGCAAG ATAAAATCGA CCCTGAGAGC CACGGGCGAG
CGTGAAGTGA CCTCTAAGAT GATAGGTAAC CTGATGATGG ATCACTTGGT CAATCTCGAC
AAGGTGGCCT ATATCCGTTT CGCCTCTGTG TACCGCGCCT TCGAAGATGT CTCCGAGTTC
GGCGAGGCGA TTGCCAAATT GCAAAACGAT AAGAGCAAGT CGGGTAAGTC GTAA
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| Protein sequence | MHCPFCSATD TKVIDSRLVA DGHQVRRRRE CLLCHERFTT FEGAELVMPR VVKQDGSRQP
FDEDKLRGGM LRAVEKRPVS MDEIEQALSK IKSTLRATGE REVTSKMIGN LMMDHLVNLD
KVAYIRFASV YRAFEDVSEF GEAIAKLQND KSKSGKS
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