| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1178 |
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| Symbol | |
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| ID | 4922420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1362520 |
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| End bp | 1365648 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162712 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001093307 |
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| Protein GI | 127512110 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCTGT CGGATGTGTC GGTAAAACGC CCTGTGGTGG CGCTCGTCTT AAGCTTACTG
CTGTGTGTAT TTGGTCTGGT GAGTTTCTCC AAGCTGGCGG TGCGAGAGAT GCCGGATGTG
GAGAGCCCCG TGGTGACTGT GATGACCAGT TACAGCGGCG CCTCGGCCAG CATCATGGAG
AGTCAGATCA CCACAGTGCT CGAGGATGAG CTGACGGGGA TCAGCGGTAT CGACGAGATC
ACCTCTGTGA CCCGCAACGG CATGTCACGC ATCACCATCA GCTTCGATCT GGACTGGAAC
CTAACCGAAG GGGTGAGCGA TGTGCGCGAC GCCGTGGCTC GCGCCCAGCG CCGTCTGCCC
GACGAGGCGG ATGAGCCCAT CGTTTCCAAG GATAATGGGT CGGGCGAACC TTCCGTCTAC
ATCAACCTCA GCTCCAGCAC CATGGACAGG ACTCAGCTGA CCGACTATGC CCAGCGAGTG
CTTGAGGACA GATTTAGCCT GATCACCGGG GTGAGCTCGG TAAATATCTC CGGCGGTCTC
TACAAGGTGA TGTATGTGCA GTTGGATCCT AAGTTGATGG CCGGACGCGG GGTGACCACC
ACAGATATTA CCGATGCGCT GCGCAGCGAA AACGTGGAGA GCCCGGGCGG TGAGGTGCGC
AACGACACGA CTGTAATGAC AGTGCGCACC GCCAGGCTCT ATCTGCATCC CGAAGACTTC
GATTACCTGG TGGTGCGAAC TGCAAGCGAC GGTAGCCCCA TCTATCTCAA GGATGTGGCG
CGGGTGTTTA TCGGCGCCGA GAATGAAAAC TCCACCTTCA AGAGTGACGG CGTGCCTAAC
CTCAGCTTAG GGATCGTGGC CCAGTCGGAT GCCAATCCTC TGCAGGTGGC GCAGCGGGTG
CGCGAGGAGG TGGATAAGCT CCAGAAATTC CTGCCCGAGG GCACTCAGCT GTCGGTGGAT
TATGACTCGA CCGTCTTTAT CGACCAGTCT ATCGGCGAGG TGTACAACAC CCTCTATATC
ACCGGGGCCC TGGTGGTCTT GGTGCTTTAT CTGTTTATCG GTCAGGCTAG GGCGACGCTG
ATCCCTGCGG TGACCGTGCC TGTGTCGCTG ATCTCGGCCT TCATCGCCGC CAACTACCTG
GGTTACTCCA TCAATCTCCT GACCCTGATG GCGCTCATCC TGGCTATCGG CCTGGTGGTG
GATGATGCCA TCGTGGTCGT TGAAAACATC TTTCATCATA TCGAGCGGGG GGAACCTGCG
ATTCTGGCGG CCTATAAGGG TGCCAGAGAG GTGGGGTTTG CCGTGGTGGC GACTACCGCC
GTGTTGGTGA TGGTGTTTCT GCCTATCTCC TTCATGGATG GCATGGTGGG GCGCCTCTTT
ACCGAGTTTG CCGTGATGCT GGCCATGGCG GTGATCTTCT CATCGGTTAT CGCCCTAACC
CTGACCCCAG TGCTTGGCAG CAAGCTCCTC AAGCGTAAAC ACAGGCCCAA AGCCCTTAAC
CGCTTGATGG ACAGCGGCTT CGCTCGACTC GAAGCCTGGT ATCGCCGCGC CGTGGCCTGG
GCGGTGCGTT ACCGCCTGGC GGCGCCAGTG GTGATTGTCG CCTGTGTCAT AGGAAGCGGT
CTGCTGATGA ACCAGGTGCC GGCGCAGCTG GCGCCCCAGG AAGACAGAGG GGTGATCTTC
GCCTTCGTCA AGGGCGCGGA GGGCACCAGC TACAACCGTA TGACGTCTAA TATGGATATC
GTCGAGCAGC GGCTGATGCC ACTGCTCAGT CAGGGGGTGA TCAAATCCTT TAGCGTACAG
GCGCCGGCGT TCGGGGGGCG GGCCGGGGAT CAAACCGGCT TTGTGATCAT GCAGCTAGAG
GATTGGCAGG CCCGTGATAT CAACGCGCAG CAGGCGCTGG CCGTGGTGGC TAAGGCGCTC
AAGGGGATCC CCGATGTCAT GGTGCGGCCC ATGTTGCCCG GCTTTAGGGG CAAGTCCAGC
GAGCCGGTGC AATTTGTGCT GGGCGGCAGT GACTATGATG AGCTGTTTAA GTGGGCGAGC
AAGCTTAAGG CGATCGCCGA TGCCTCGCCA ATCGTCACGG GGGCCGATCT CGACTATGCC
GAGACCACCC CAGAGCTGGT GGTGAGCGTG GATAGGCAAC GCGCCGCCGA GCTTGGGATC
AGCGTGGCTC AGGTGTCTCA GACGCTAGAG GTGATGCTAG GTGGACGCAG CGAGACCAGC
TTTATCGAAC GCGGCGAAGA GTATGACGTA TATCTGCGGG GCAAGGAGGA GAGCTTTAAC
AGCATGGCGG ATTTGAGCCA GATCTATATG CGCGCCGCCA ACGGTGAGCT GATCACCCTA
GATGCCATCA CCCATATCGA GGAGGTCGCC TCGGCCCATA AGCTAAGCCA TACCAATAAG
CAGAAGTCGA TCACTCTCAA GGCCAACCTC GGTGAGGGCT ATACCTTAGG TGAGGCGCTT
GACTTCCTCG ATGCCAAGGC TATCGAGATC TTACCCGGGG ATATCAGCAT CAGCTACACG
GGGGAGTCGA AAGAGTTTAA GGAAAATCAA AGCAGCGTCA TGCTGGTCTT CGCCCTAGCG
CTGCTTGTAG CCTACCTGGT GCTGGCGGCC CAGTTCGAGA GTTTCATCAA CCCGCTGGTG
GTGATGCTGA CGGTTCCTAT GGGGATCTTC GGCGGATTCA TCGGTCTCTA TCTGATGGGG
CTCGGGCTCA ACATCTATAG CCAGATCGGG ATGATCATGC TGATCGGCAT GGTGACTAAG
AACGGCATAC TGATCGTCGA GTTTGCCAAT CAGCTCAGGG ATAGGGGCGC CTCGCTGGAA
CAGGCGATAC TGGACGCCTC CGCGCGTCGC CTGCGCCCCA TTCTGATGAC GGCCTTCACC
ACCTTGGTCG GTGCCGTGCC CTTGATTCTA TCGAGCGGCG CCGGTTCTGA GAGCCGGATC
GCCGTGGGCA CAGTTGTGTT CTTCGGCATG GCGTTCGCCA CCCTGGTGAC CCTGTTGGTG
ATCCCTGCCA TGTATCGGCT GATCTCGGGT CGCACCCGCT CACCGGGTTT CGTCGCCGCC
CAGCTTGAGA CCGCCATCGC CAAACAGCAG GCAAGCGGCG CCTTAGTGGC TGGATGTTCG
ACTAGGTGA
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| Protein sequence | MLLSDVSVKR PVVALVLSLL LCVFGLVSFS KLAVREMPDV ESPVVTVMTS YSGASASIME
SQITTVLEDE LTGISGIDEI TSVTRNGMSR ITISFDLDWN LTEGVSDVRD AVARAQRRLP
DEADEPIVSK DNGSGEPSVY INLSSSTMDR TQLTDYAQRV LEDRFSLITG VSSVNISGGL
YKVMYVQLDP KLMAGRGVTT TDITDALRSE NVESPGGEVR NDTTVMTVRT ARLYLHPEDF
DYLVVRTASD GSPIYLKDVA RVFIGAENEN STFKSDGVPN LSLGIVAQSD ANPLQVAQRV
REEVDKLQKF LPEGTQLSVD YDSTVFIDQS IGEVYNTLYI TGALVVLVLY LFIGQARATL
IPAVTVPVSL ISAFIAANYL GYSINLLTLM ALILAIGLVV DDAIVVVENI FHHIERGEPA
ILAAYKGARE VGFAVVATTA VLVMVFLPIS FMDGMVGRLF TEFAVMLAMA VIFSSVIALT
LTPVLGSKLL KRKHRPKALN RLMDSGFARL EAWYRRAVAW AVRYRLAAPV VIVACVIGSG
LLMNQVPAQL APQEDRGVIF AFVKGAEGTS YNRMTSNMDI VEQRLMPLLS QGVIKSFSVQ
APAFGGRAGD QTGFVIMQLE DWQARDINAQ QALAVVAKAL KGIPDVMVRP MLPGFRGKSS
EPVQFVLGGS DYDELFKWAS KLKAIADASP IVTGADLDYA ETTPELVVSV DRQRAAELGI
SVAQVSQTLE VMLGGRSETS FIERGEEYDV YLRGKEESFN SMADLSQIYM RAANGELITL
DAITHIEEVA SAHKLSHTNK QKSITLKANL GEGYTLGEAL DFLDAKAIEI LPGDISISYT
GESKEFKENQ SSVMLVFALA LLVAYLVLAA QFESFINPLV VMLTVPMGIF GGFIGLYLMG
LGLNIYSQIG MIMLIGMVTK NGILIVEFAN QLRDRGASLE QAILDASARR LRPILMTAFT
TLVGAVPLIL SSGAGSESRI AVGTVVFFGM AFATLVTLLV IPAMYRLISG RTRSPGFVAA
QLETAIAKQQ ASGALVAGCS TR
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