| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1171 |
|---|
| Symbol | glgC |
|---|
| ID | 4921412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1353301 |
|---|
| End bp | 1354575 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640162705 |
|---|
| Product | glucose-1-phosphate adenylyltransferase |
|---|
| Protein accession | YP_001093300 |
|---|
| Protein GI | 127512103 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0448] ADP-glucose pyrophosphorylase |
|---|
| TIGRFAM ID | [TIGR02091] glucose-1-phosphate adenylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.591039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAACA TGAATCCTAG CCCACGTTAT ATCAGTAATT TAACCCGAGA AACCTATGCA
TTAATCTTGG CCGGGGGGCG AGGTTCACGT CTGCATGAAT TGACCGACTG GCGCGCCAAG
CCGTCGCTCT ATTTCGGGGG TAAGTTCCGC ATCATCGACT TCCCGCTGTC GAACTGCATC
AACTCGGGCA TTCGCCGCAT CGGCGTGGTG ACCCAGTACA AGTCGCACTC GTTGATCCGC
CACGTGATGC GCGGCTGGGG CCACTTCAAG AAGGAGCTGG GGGAGTCGGT GGAGATCCTG
CCCGCCTCTC AGCGTTACTC CGAGAGCTGG TATAAGGGTA CGGCCGATGC GGTATTTCAG
AATATCGACA TCATACGCCA TGAGCTGCCC AAGTATGTGA TGATCCTCTC TGGCGATCAC
GTCTATCGCA TGGACTATGC GGGCCTGCTG GCCGCCCATG CCGAGTCGGG CGCCGACATG
ACGGTCTCCT GCCTCGAGGT GCCGGTGGCC GAGGCGGCGG GTGCCTTTGG GGTGGTCGAG
GTGGATGAGC GCAACAAGAT TTTGGGTTTC GAAGAGAAAC CTGAGCTGCC CAAGCACCTG
CCGGAAAATC CCGAGATGTG TCTGGCGTCT ATGGGTAACT ATGTGTTTAA CACAGAGTTT
TTGTTCGAGC AGCTCAAGAA AGATGCCATG AACGAGAACT CGGATCGCGA CTTTGGCAAG
GATATCATCC CGTCGATTAT CGAGGGGCAC GAGGTCTATG CCCACCCGTT CAGAAGTGGC
TTCACCGATG AGGAGGCCTA CTGGCGTGAC GTGGGCACCC TGGATTCCTT CTGGCAGGCT
AACATGGAGC TGCTATCGCC CACCCCGGCG CTGAATCTTT ATGATGCCAA GTGGCCCATC
TGGACCTTCC AGGAGCAGCT GCCGCCGGCC AAGTTTGTCT TCGATGACGA CGAGCGTCGC
GGCATGGCGG TGGACTCCAT CGTCTCCGGT GGCTGTATCA TCTCTGGCTC TACCGTGAGA
CGCAGCGTGC TGTTTAACGA GGTGCAGGTC TGCTCCTACT CCACGGTGGA AAACGCTGTG
GTACTGCCCG ATGTGGTGGT GCTGCGTCAC TGCCAGATCA AGAATGCCAT CTTAGACAGA
GGCTGCATCA TCCCCGAGGG TACGGTAATT GGCCACGACC ATGATCACGA CAGGGCGCGG
GGCTTTAGGG TTTCGGAAGG TGGGATCACC CTGGTGACCC GTGACATGTT GGGGTTACCG
GTGGGTTATG AGTAA
|
|---|
| Protein sequence | MPNMNPSPRY ISNLTRETYA LILAGGRGSR LHELTDWRAK PSLYFGGKFR IIDFPLSNCI
NSGIRRIGVV TQYKSHSLIR HVMRGWGHFK KELGESVEIL PASQRYSESW YKGTADAVFQ
NIDIIRHELP KYVMILSGDH VYRMDYAGLL AAHAESGADM TVSCLEVPVA EAAGAFGVVE
VDERNKILGF EEKPELPKHL PENPEMCLAS MGNYVFNTEF LFEQLKKDAM NENSDRDFGK
DIIPSIIEGH EVYAHPFRSG FTDEEAYWRD VGTLDSFWQA NMELLSPTPA LNLYDAKWPI
WTFQEQLPPA KFVFDDDERR GMAVDSIVSG GCIISGSTVR RSVLFNEVQV CSYSTVENAV
VLPDVVVLRH CQIKNAILDR GCIIPEGTVI GHDHDHDRAR GFRVSEGGIT LVTRDMLGLP
VGYE
|
|---|
| |