| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1168 |
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| Symbol | |
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| ID | 4921318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1346226 |
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| End bp | 1348523 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162702 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_001093297 |
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| Protein GI | 127512100 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.159491 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAGC AGATACCAGT GCAGACACCT GCGCAGACAC CACTGATAGC GCCAAGTGAA
ATTGAAGCCC TGCTGGCTGC CGACTACGTG GATATCTTCG CCTTGTTGGG GATGCATGCT
ATAGAGATGG CTCCGGCCAC TAAGTCTAGT AAGGGCATCA AGGAGGCTAA GGCGGTAAGC
CTGGTCAAAC GCCTGGTGGT GCGCTGTTTT CTGCCGGGGG CAGAGCGGGT TGAGCTGATC
GCCAAGCAAG ATGGCCGCAA GGTGGCCGAG CTGGACAAGT GCCACGATGA GGGGATCTTT
GCCGGGCTCG CCGGGCGGCG CATCAACCCT TTCGAGTATC GCCTGCGAGT GCATTATCCT
TTCAGCGTCG AGGAGATAAA CGACCCTTAC CAATATGCCA GCCTGCTGAG TGATGAGGCG
CTGTACCTCT TCAGCGAGGG GCGTCAGGAG CAGGCCTATC GTTTCATGGG GGCCAACTGG
CGTGAGGTCG ATGGGGTGAG CGGCGTGCAG TTTTGTGTCT GGGCGCCCAA TGCCAAGCGG
GTCTCTCTGG TGCACGATGC CATCGACTGG GACGGCAGAC GTCAGGTGAT GCGCCACCAT
CCGGCCAATG GCGTGTGGGA GATCTTCATC CCCTCGATGA AGGCGCTGAC CCACTATAAA
TATGAGATTG TCACTCAGGA GGGAGAGCGA CTGCTCAAGG CCGATCCCTT CGGCCGCGCC
ATGCAGGGCG CCCCGGGTAA CGCTTCAATC GTACCGCCCC AGCTCGACTA TGCCTGGCAG
GATAAGCGCT GGCTGGCGAA ACGGGCCAAG CAGAGCTGGC ACGATCAGCC CATCTCCATC
TATGAGGTGC ATCTTGGATC CTGGCGTCGC CAGGGGGAAA ACGGCGAGCA GTATCTCAGC
TATAGCCAGC TTATCGATCA GCTGATCCCC TATGTGGTCG AGATGGGCTA CACCCATCTG
CAACTGATGC CCCTGTGCGA ATATCCCTTC GACGGCTCCT GGGGCTATCA ACCGGTCGGC
CTGTTTGCGC CGACCCACAG ATTCGGCCAG CCTCACGAGC TCAAGGCCTT CGTCGATGCT
TGTCATCAGG CCGGCATAGG GGTGATCCTC GACTGGGTCG CGGCGCATTT CCCCAAGGAT
CCCCATGGAC TGACCCGCTT CGACGGCTCC TGTCTCTATG AGCATGAGGA TCCCCGTCAG
GGAGAGCATC CAGATTGGGA TACCCTTATC TACAACTATG GCCGCGGCGA GGTGCAGAGC
TATCTGCTCA GCAACGCCCA TTACTGGCTG CAGGAGTTTC ATTTAGATGG CTTGCGCCTG
GACGCCGTCT CTTCCATGCT TTATCTCGAC TACAGCCGCG AGCCCCATCA GTGGCTGCCT
AACGCCCATG GCGGGCGCGA GAATCTGGAT GCCATCGCCT TCTTGCAGGA CCTCAACACG
CGTCTCTACC AAGGCTTTCC CGGCATCATG ATGATCGCCG AAGAGTCCAC CGCCTGGCCC
GGTGTCACCA AGCGGGTCGA TGAGGGCGGC CTGGGCTTCG GCTTTAAGTG GAATATGGGC
TGGATGAACG ACAGCCTGAA CTATATCGGC CGGGATCCCA TCCATCGTAG CCATCATCAT
AACGAGCTGA CCTTCAGCCT GATGTACTGC TTCACCGAGC AGTTCATCCT GTCGCTGAGC
CATGACGAGG TGGTGCATGG CAAGGGCTCC TTGCTGCATA AGATCCCCGG CGACGACTGG
CAGAAGTTTG CCACCCTGCG GGCCTATCTG GGCTTCATGT GGGGCCATCC CGGTAAGAAG
CTGCTCTTCA TGGGCGCAGA TTTTGCCCAG CGCGACGAGT GGGATCATCA GCATAGCCTC
GACTGGCACC TACTGGCGTT CGAGCCCCAC CAGGGGATGC AGCGCTGGGT GAAAGATCTC
AACAGCCTCT ATCGTCAGAG CGTTGCCCTC TATGGCGACG ATCACCACGG CGAGGGCTTT
AGTTGGCTTG ACTGCGATAA CGCCAGCGCC AGCGTACTGA GTTTTATCCG CCAGAGCGGC
GACAAGCAGC TGATCTTTAT TGTTAATATG ACCCCAGAGG TCTACCGTGA GTTTCGCATC
GGTCTGCCGC AGCCCGGGCG CTACCATGAG CGCCTCAACA GCGACAGCCA CTATTATGGC
GGCAGCGACG TGGGCAATCA GGGGGTTATC CACACCGAGC CCGAGGCCTA TCAGGGCCAA
GCTCAGAGTG CCTGCATCAG CGTGCCGCCG CTGGCCTGTC TGGTGCTGGA ACTGGACGAG
AGTGTGTCAT GCGACTGA
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| Protein sequence | MTKQIPVQTP AQTPLIAPSE IEALLAADYV DIFALLGMHA IEMAPATKSS KGIKEAKAVS
LVKRLVVRCF LPGAERVELI AKQDGRKVAE LDKCHDEGIF AGLAGRRINP FEYRLRVHYP
FSVEEINDPY QYASLLSDEA LYLFSEGRQE QAYRFMGANW REVDGVSGVQ FCVWAPNAKR
VSLVHDAIDW DGRRQVMRHH PANGVWEIFI PSMKALTHYK YEIVTQEGER LLKADPFGRA
MQGAPGNASI VPPQLDYAWQ DKRWLAKRAK QSWHDQPISI YEVHLGSWRR QGENGEQYLS
YSQLIDQLIP YVVEMGYTHL QLMPLCEYPF DGSWGYQPVG LFAPTHRFGQ PHELKAFVDA
CHQAGIGVIL DWVAAHFPKD PHGLTRFDGS CLYEHEDPRQ GEHPDWDTLI YNYGRGEVQS
YLLSNAHYWL QEFHLDGLRL DAVSSMLYLD YSREPHQWLP NAHGGRENLD AIAFLQDLNT
RLYQGFPGIM MIAEESTAWP GVTKRVDEGG LGFGFKWNMG WMNDSLNYIG RDPIHRSHHH
NELTFSLMYC FTEQFILSLS HDEVVHGKGS LLHKIPGDDW QKFATLRAYL GFMWGHPGKK
LLFMGADFAQ RDEWDHQHSL DWHLLAFEPH QGMQRWVKDL NSLYRQSVAL YGDDHHGEGF
SWLDCDNASA SVLSFIRQSG DKQLIFIVNM TPEVYREFRI GLPQPGRYHE RLNSDSHYYG
GSDVGNQGVI HTEPEAYQGQ AQSACISVPP LACLVLELDE SVSCD
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