| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1159 |
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| Symbol | |
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| ID | 4923353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1333367 |
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| End bp | 1333735 |
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| Gene Length | 369 bp |
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| Protein Length | 122 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162693 |
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| Product | thioesterase superfamily protein |
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| Protein accession | YP_001093288 |
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| Protein GI | 127512091 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1607] Acyl-CoA hydrolase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00426691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAAATATT ACAGTCGACG CTTTATTAAA CCCGAACATT TAAATCCGGC TAATGCATTG
TTCGGCGGAC AGTTATTAAG CTGGATAGAT GAGGAGGCGG CCATCTTCGC GGCCTGTCAG
ATGAATAGCC AGAGCATAGT CACCAAGATC ATCTCAGAGA TCAACTTCAT GACCCCGGCG
CGCCAGGGCG ATGTGATCGA GTTCGGCTTA GCGCTCATCA GTGCCGGGGT TAGCTCCATC
ACCGTCTGCT GCGAGGTGCG TAACAAGGCG ACCCGTCTGC CTGTGGTGAC CATAGATAAG
ATGATCTTCG TTAACGTGGA TGAGAACGGC CTGCCCAAGC CCCATGGTAT GCGGGCTAAT
GCTGCCTAA
|
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| Protein sequence | MKYYSRRFIK PEHLNPANAL FGGQLLSWID EEAAIFAACQ MNSQSIVTKI ISEINFMTPA
RQGDVIEFGL ALISAGVSSI TVCCEVRNKA TRLPVVTIDK MIFVNVDENG LPKPHGMRAN
AA
|
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