Gene Shew_1147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1147 
Symbol 
ID4922249 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand+ 
Start bp1322126 
End bp1322689 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content53% 
IMG OID640162682 
Producthypothetical protein 
Protein accessionYP_001093277 
Protein GI127512080 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.00658881 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.0364761 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGG TGATTATCTT AGCCGCTGCA CTTGCCCTGT CGGCCTGTAG CACACTGAAA 
ACCAGCTCTG ATTATGATCC CAAGGTCAAC TTCGATGATG TGAAGAGCTA TGCATGGGTG 
GTGAAGAAGA CTGAAGATAC CACCTACAAC TTAGATGGCT TGATGGATCA GCGCGTTCGC 
GAGGCGGTAG ACCGTGAACT GCAGATGAAG GGGATCAGCA AAGTGGAGGC GGACAACGCC 
GACGTGCTGG TGAACTACTT CACTAAGGTC GACAAGAAGA TCAATGTCGA TACCTTTAAT 
ACCAACTTTG GTTACGACCC TTACTACTAT GGCCCGGGTT GGGGCTGGGG CGGTAGCGTT 
CACACCCAGA CCACGGTACG TGAGTATGAG GTGGGCACCC TGGTGCTGGA CATGATCAAC 
AAAGAGACGG GCAAGCTTAT CTGGCGCGGC TCTGTGGCCG ATACCATTCG TGACAAGAGC 
ACCCCAGAGG AGCGCGTCGA GGTGGTCAAC AAGGCAGTAG CGGCCATGAT GCTCAACTAC 
CCACCACAGA AAGAGGCGAA ATAG
 
Protein sequence
MKKVIILAAA LALSACSTLK TSSDYDPKVN FDDVKSYAWV VKKTEDTTYN LDGLMDQRVR 
EAVDRELQMK GISKVEADNA DVLVNYFTKV DKKINVDTFN TNFGYDPYYY GPGWGWGGSV 
HTQTTVREYE VGTLVLDMIN KETGKLIWRG SVADTIRDKS TPEERVEVVN KAVAAMMLNY 
PPQKEAK