| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1138 |
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| Symbol | |
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| ID | 4923240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1312270 |
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| End bp | 1313307 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162673 |
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| Product | twitching motility protein |
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| Protein accession | YP_001093268 |
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| Protein GI | 127512071 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.236895 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATCA CAGAGTTACT TGCCTTTAGT GTAAAACACA ACGCGTCGGA TCTACACCTT
TCTGCGGGAG TCTCTCCCAT GATACGTGTT GATGGTGAGG TCAGAAAGAT TAATCTGCCG
GCCCTGGATC ATCAAGGCGT ACACAGCCTC GTTTATGACA TCATGAACGA CAAACAGCGT
AAAGATTATG AAGAGCATTT AGAGATAGAT TTCTCGTTCG AAGTGCCCAA CTTAGCCCGT
TTCCGTGTGA ACGCCTTTAA CCAGTCCCGC GGCGCCGCGG CGGTGTTCCG TACCATTCCC
AGCGAGATCT TAAGCCTGGA GAAATTGGGC GCCCCTGAGA TTTTCAAGAA GATTGCCAGC
TTTCCCCGTG GTCTGGTGTT GGTAACCGGC CCGACAGGTT CGGGTAAGAG TACCACCCTG
GCGGGCATGA TAGATTATGT GAACGAGAAC CGTCACGACC ATATCCTGAC CATCGAAGAC
CCTATCGAAT TCGTGCATCA GAACAAGCAG TGTCTTATCA ACCAACGTGA GGTGCACAGA
CACACCCACA GCTTCAACGC CGCGCTGCGT AGCGCACTGC GTGAAGACCC GGACGTGATC
CTGGTGGGTG AGATGCGTGA CCTCGAAACT ATACGTCTGG CGATGACGGC GGCGGAAACC
GGTCACTTGG TATTTGGTAC TTTGCACACC ACCTCGGCGG CGAAAACCAT CGACCGTGTG
GTCGACGTAT TCCCAGAGGG CGAGAAGAGT ATGGTGCGTA CCATGTTGTC TGAGTCCCTG
CAGGCGGTAA TCTCCCAGAC CCTGATCAAG AAGGTTGGCG GCGGTCGTGT GGCGGCCCAC
GAGATCATGA TGGGTACCCC GGCGATTCGT AACCTTATTC GCGAAGATAA GGTGGCACAG
ATGTACTCGG CCATTCAAAC GGGTATGGCC CACGGCATGC AGACCCTAGA TCAGTGTCTG
CAAAATCTGG TCAACCGTGG CCTGATCACC CGTGAAGATG CGATGGCCAA GAGTTCTAAT
AAAAACGCTA GTTTCTAG
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| Protein sequence | MEITELLAFS VKHNASDLHL SAGVSPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR
KDYEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SEILSLEKLG APEIFKKIAS
FPRGLVLVTG PTGSGKSTTL AGMIDYVNEN RHDHILTIED PIEFVHQNKQ CLINQREVHR
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPEGEKS MVRTMLSESL QAVISQTLIK KVGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSAIQTGMA HGMQTLDQCL QNLVNRGLIT REDAMAKSSN KNASF
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