| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1131 |
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| Symbol | |
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| ID | 4922053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1307332 |
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| End bp | 1308471 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162666 |
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| Product | putative oxygen-independent coproporphyrinogen III oxidase |
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| Protein accession | YP_001093261 |
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| Protein GI | 127512064 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00230562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.548541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTACGC TTCCTCCGCT CAGTCTCTAT ATTCACATTC CCTGGTGCGT ACAGAAGTGT
CCCTACTGCG ACTTCAACTC CCATGGCCAG CATGGTGAAC TGCCGCAGCA GGAATATGTG
GACGACCTTC TCAATGATCT GAAAAACGAT GCGGCCTATG TACAGGGGCG CAGCCTGCAC
TCCATCTTTA TCGGTGGCGG CACGCCCTCC CTGTTCGATG CAAGCCAGAT AGAGCGACTG
CTCGATGGTG TAAGGGCGCA GATCCCTTTT GCACCGGATA TAGAGATCAC CATGGAGGCC
AACCCTGGCA CACTAGAGCA CGATGACTTT AGCGCCTACT GCGCCGCCGG GGTGACTCGC
CTCTCCATCG GCGTGCAGAG TTTTTCCAGC GATAAGCTCA ATCTGCTAGG GCGAATTCAC
GACAAGCATG AGGCGGAAGT GGCGGCTACC AAGGCGGCCC AGGCCGGTTA TCAGAGTTTT
AACCTGGATC TCATGCACGG CCTGCCCAAT CAAAGCTTCG AGGAAGCGAT GCGGGATATC
GATAAGGCGG CGGCCCTCAA TCCGCCCCAT CTTTCCTGGT ATCAGCTCAC CATAGAGCCT
AATACCCTGT TTCACTCAAA ACCGCCCCAG CTGCCGGATG ATGAGGCGCT GTGGCAGATC
TATGAGCAGG GCCAGCAGCG CCTCGCGGCG CTCGGCTATG AGCAGTATGA GATCTCCGCC
TACGCCAAGC CCGGCTACCA GTGTCGTCAC AACCTCAACT ACTGGCAGTT TGGTGACTAT
CTGGGGATCG GCTGTGGTGC CCACGGCAAG ATCACCATGG CAGAAGATCA GCGCATCTAC
CGCACGGTGA AGATAAAGCA TCCCAAGGGT TATCTGGGCG CCGGTGACTA TCTATTCGAT
AAGAGCGAGG TACTAGCGGA AGACAGGGCG CTGGAATACC TGATGAACCG CCTGAGGCTG
ATGTCGCCCA TCCCTAAGCG CGAGTTTGAG AGCCGCACCG GCCTCTCGGC AGAGGTGCTG
AATGAAGGCA TGGCGCGGGG CGCGGCGAAG GGACTGGTCA TCATACAAGA TGAACATTGG
CAGCTCACGG CCAAGGGGCA GATGTTTGTC AACGAACTAC TTGGGCTATT TTGCGAATAA
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| Protein sequence | MLTLPPLSLY IHIPWCVQKC PYCDFNSHGQ HGELPQQEYV DDLLNDLKND AAYVQGRSLH
SIFIGGGTPS LFDASQIERL LDGVRAQIPF APDIEITMEA NPGTLEHDDF SAYCAAGVTR
LSIGVQSFSS DKLNLLGRIH DKHEAEVAAT KAAQAGYQSF NLDLMHGLPN QSFEEAMRDI
DKAAALNPPH LSWYQLTIEP NTLFHSKPPQ LPDDEALWQI YEQGQQRLAA LGYEQYEISA
YAKPGYQCRH NLNYWQFGDY LGIGCGAHGK ITMAEDQRIY RTVKIKHPKG YLGAGDYLFD
KSEVLAEDRA LEYLMNRLRL MSPIPKREFE SRTGLSAEVL NEGMARGAAK GLVIIQDEHW
QLTAKGQMFV NELLGLFCE
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