| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1124 |
|---|
| Symbol | trmB |
|---|
| ID | 4923842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1299395 |
|---|
| End bp | 1300111 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162659 |
|---|
| Product | tRNA (guanine-N(7)-)-methyltransferase |
|---|
| Protein accession | YP_001093254 |
|---|
| Protein GI | 127512057 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0220] Predicted S-adenosylmethionine-dependent methyltransferase |
|---|
| TIGRFAM ID | [TIGR00091] tRNA (guanine-N(7)-)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000270248 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAG TGACCACCGC AGAGTTTAAC GAAGAGGGTA AATACCTTCG CAAAGTGAGA
AGCTTTGTTT TACGTGAAGG ACGTTTGACC AAGGGCCAGG CGCAGGCGAT GGAGCAGCAA
TGGCCTGTGA TGGGACTGGA CTACTCGCCC GAGCCTTTGG ATCTGGTCAA GGTGTTTGGC
CGGCAGGCCG ATACCGTGCT GGAGATAGGG TTCGGCATGG GCGCCTCACT GGTTGAGATG
GCTAAGGCAG CTCCCGAGCT TAACTTTATC GGTATCGAAG TTCACAAGCC TGGCGTGGGT
GCTTGTCTTG CTGATGCGGC TGAGGCCGGC GTCACCAACT TGCGTGTGTT CCACCACGAC
GCCATCGAGG TGTTGGAAAA CAGCATCCAA AGCGGCAGCC TGGCCAGAGT ACAGCTATTC
TTCCCAGATC CTTGGCACAA GAAGCGTCAT CATAAGCGCC GTATCGTTCA GCCGGAATTT
GCCGAGCTTA TCCGCCGCTG CCTTAAGATA GGTGGTGTGT TCCACCTGGC GACCGATTGG
GAAAACTACA GCGAGCACAT GTTAGAGGTG ATGAGCGCGG CGCCTGGCTA TAAGAACCAG
GCGCAGGATG GCGACTTCGT GCCCCGTCCA GATCATCGAC CGCTGACCAA GTTTGAGGCC
AGGGGCCATC GTCTGGGACA TGGCGTCTGG GATCTGATGT TCGAGCGTAC CGAGTAA
|
|---|
| Protein sequence | MSEVTTAEFN EEGKYLRKVR SFVLREGRLT KGQAQAMEQQ WPVMGLDYSP EPLDLVKVFG
RQADTVLEIG FGMGASLVEM AKAAPELNFI GIEVHKPGVG ACLADAAEAG VTNLRVFHHD
AIEVLENSIQ SGSLARVQLF FPDPWHKKRH HKRRIVQPEF AELIRRCLKI GGVFHLATDW
ENYSEHMLEV MSAAPGYKNQ AQDGDFVPRP DHRPLTKFEA RGHRLGHGVW DLMFERTE
|
|---|
| |