Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1083 |
Symbol | |
ID | 4922776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1247062 |
End bp | 1247913 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162616 |
Product | apurinic endonuclease Apn1 |
Protein accession | YP_001093213 |
Protein GI | 127512016 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0648] Endonuclease IV |
TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0228384 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0872132 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGACA CTCATTGGGT CGGTGCCCAT GTTAGCGCCG CCGGCGGTAT CGCCAACGCG CCGCTGAACG CACAGAAGAT AGGTGCCAAT GCCTTCGCGC TGTTCACCAA GAATCAGAGA CGCTGGCAGT CAGCACCGCT CTGCCCTTCG CAGATTGATG CCTTCAAGGC CAACTGCGAG CAGGCCAACA TTCACCCCGA TGCCATTCTG CCCCACGACA GCTACCTGAT TAATCTTGGC CACCCAGATG AGGAGCAGCT AGCGCGCTCG CGAGAAGCCT TTCTCGACGA GATGCAGCGC TGCGAACAGA TGGGATTGAC CCTGCTCAAC TTTCATCCCG GCAGTCATCT CAACAAGATA GGCATAGACG AGTGCCTGGC CCGCATCAGC GAATCGATCA ACCTAGCACT GGACAAGACC CAAGGCGTCA GCGCCATCAT AGAAAACACC GCAGGCCAGG GGTCAAACCT GGGCCATAGC TTCGAGCAGC TGGCACAGAT CATCGACAAA GTAGAAGATA AGAGCCGGGT CGGTGTCTGT ATCGACACCT GCCACATGTT TGCCGCCGGC TACGATTTAA CCACTCTCGA GGCCTGCGAG GAGAGCTTCG GCCAATTTGA TGCCATAGTG GGTAACCATT ACCTTAAGGC GATGCACCTC AACGACAGCA AGACACCGCT TAATAGCCGG GTCGACAGGC ACCACTCCCT CGGCGCCGGT TATATCGGTA TGGATGCCTT TAGCTATATC ATGAAACATC CGGCGACCAG GCAGATCCCC CTCATATTAG AAACGATAGA ACCTGAGATC TGGCCCCAAG AGATCAACTG GCTACGTAGC CAGACACGCT AA
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Protein sequence | MPDTHWVGAH VSAAGGIANA PLNAQKIGAN AFALFTKNQR RWQSAPLCPS QIDAFKANCE QANIHPDAIL PHDSYLINLG HPDEEQLARS REAFLDEMQR CEQMGLTLLN FHPGSHLNKI GIDECLARIS ESINLALDKT QGVSAIIENT AGQGSNLGHS FEQLAQIIDK VEDKSRVGVC IDTCHMFAAG YDLTTLEACE ESFGQFDAIV GNHYLKAMHL NDSKTPLNSR VDRHHSLGAG YIGMDAFSYI MKHPATRQIP LILETIEPEI WPQEINWLRS QTR
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