Gene Shew_1075 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1075 
Symbol 
ID4920971 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1238761 
End bp1239222 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content52% 
IMG OID640162608 
Productcytochrome c, class II 
Protein accessionYP_001093205 
Protein GI127512008 
COG category[C] Energy production and conversion 
COG ID[COG3909] Cytochrome c556 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000870281 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC AGATTAAATT AAGCCTGCTA GCCCTAGCCG GCAGTGCCTT ACTGGCCTCA 
GCGGTACAAG CCAATAACTT CAAAGAGACA GACGATGCGA TCCACTATCG TCAATCTGCT
TTTGGCCTGA TCGCTCACAA CTTTGGCGAC ATGGGCGCCA TGCTTAAGGG CAAGAAGCCG
TTCGACGCCG AAGTCTTTGC CATGCGTGCA CAAAACGTTG CCGCACTGAG CAAGCTACCT
GCCGAAGGAT TCGTTGCCGG TTCTGACAAG GGCCACACAG ATGCGCTGGC AAAGATCTGG
AGCGACAAGG CCGATTTCGA CGCTAAGATG AGCGCTTTCC AAGACAACGC CGCTAAACTC
GCCGTTGCCG CACAATCAAG CGATCAGAAC GCTATCAAGC AAGCCTTTAT GAACACAGGC
AAGAGCTGTA AGGGCTGCCA CGACGTCTAC AAGAAAGACT AA
 
Protein sequence
MKKQIKLSLL ALAGSALLAS AVQANNFKET DDAIHYRQSA FGLIAHNFGD MGAMLKGKKP 
FDAEVFAMRA QNVAALSKLP AEGFVAGSDK GHTDALAKIW SDKADFDAKM SAFQDNAAKL
AVAAQSSDQN AIKQAFMNTG KSCKGCHDVY KKD