| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1065 |
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| Symbol | trmD |
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| ID | 4923885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1226498 |
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| End bp | 1227244 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640162598 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001093195 |
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| Protein GI | 127511998 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000436428 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTGGTTAG GGGTAGTAAC CCTGTTTCCA GAGATGTTTC GTGCCGTAAC AGACTTTGGT
GTAACGGGTC GGGCCGTAAG TAACGGTTTG TTAGAGTTGC AAACGTGGAA TCCCAGAGAT
TTCACCCATG ATAAACATAG AACAGTGGAC GACAGGCCTT ACGGCGGCGG ACCTGGCATG
TTGATGATGG TGCAGCCTCT ACGTGATGCC ATCCATGCAG CGAAAGTCGC TGCGGGTGAT
AAGGCTAAGG TGATTTATCT TTCTCCTCAG GGACGCAAGC TGACACAGCA GGGCGTTGAA
GAGTTAGCTA AATCGGAGCG TTTGATTTTA GTGTGTGGTC GCTACGAAGG TATCGATGAA
CGCATTATTC AAACGGAAGT GGATGAAGAG TGGTCGATTG GAGATTACGT GCTCTCGGGC
GGTGAACTCC CAGCGATGAC CCTGATCGAT TCGGTTTCTC GTTTGGTGCC TGGCGTGCTA
GGTAAACAAG CGTCGGCAGA GCAGGATTCC TTCTCTGACG GATTACTGGA TTGTCCCCAC
TATACTCGCC CAGAAAGCCT AGATGGTATC GATGTACCGG CGGTATTGCT TAGCGGCAAC
CACGAAAATA TTAGACGCTG GCGATTGCAG CAAAGTCTCG GAAGAACTTT ACTGCGGCGA
CCAGAATTAT TTGAAAATCT AGCTCTGACT GATGAACAAA CCAAGCTATT AGCCGAGTTT
GTTAATACCG CCCAAGCAGG CGAGTAA
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| Protein sequence | MWLGVVTLFP EMFRAVTDFG VTGRAVSNGL LELQTWNPRD FTHDKHRTVD DRPYGGGPGM
LMMVQPLRDA IHAAKVAAGD KAKVIYLSPQ GRKLTQQGVE ELAKSERLIL VCGRYEGIDE
RIIQTEVDEE WSIGDYVLSG GELPAMTLID SVSRLVPGVL GKQASAEQDS FSDGLLDCPH
YTRPESLDGI DVPAVLLSGN HENIRRWRLQ QSLGRTLLRR PELFENLALT DEQTKLLAEF
VNTAQAGE
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