Gene Shew_1064 details

Gene Information

• Locus tag: Shew_1064
• Symbol: rimM
• ID: 4923884
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 1225952
• End bp: 1226482
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640162597
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001093194
• Protein GI: 127511997
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000154206
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTAGTC ACCAAGAACC TGTCGTACTA GGCAAATTAG GCGCTAGTCA CGGCATTAAA 
GGTTGGTTGA AGATCACTAG CTATACCGAT TCTGTCGAAG ATATTTTTGA CTATTCACCT 
TGGTTGATTA AAGAGCAAGG CGAATGGCGC GAAGTCAAGG TTGCACAGTG GCGCTATCAA 
GGTAAGGCGA TTATCGCCGC CCTGGAAGGC GTAACCACTC GAGACCAAGC GCAAATGCTC 
ACTAACTGTG AGATTGCCAT TCCCGCCGAG GCGATGAAGG CACTGCCGGA AGATGAATTC 
TACTGGCGTG ATCTTATCGG CTGTGAGGTG GTGAATACTA AAGGCTACAA GATGGGCAAG 
GTCGACCAGA TCGTGGAAAC AGGATCGAAC GACGTGCTGC TTGTGAAGGC CAACGCGAAA 
GATGGCTTTG GCAAAACGGA ACGTATGATT CCTTTTGTTA CCGAGCAGTT CATCCTTGAG 
GTGAATCTGG CGGAAAAACA AATTTTAGTG GATTGGGATC CGGACTTCTA A 

 

Protein sequence

MSSHQEPVVL GKLGASHGIK GWLKITSYTD SVEDIFDYSP WLIKEQGEWR EVKVAQWRYQ 
GKAIIAALEG VTTRDQAQML TNCEIAIPAE AMKALPEDEF YWRDLIGCEV VNTKGYKMGK 
VDQIVETGSN DVLLVKANAK DGFGKTERMI PFVTEQFILE VNLAEKQILV DWDPDF