| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1054 |
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| Symbol | rnc |
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| ID | 4921965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1216933 |
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| End bp | 1217610 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640162587 |
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| Product | ribonuclease III |
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| Protein accession | YP_001093184 |
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| Protein GI | 127511987 |
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| COG category | [K] Transcription |
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| COG ID | [COG0571] dsRNA-specific ribonuclease |
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| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0953416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAACCCA TTAAGAATCT ACCGCGTTTG GGTAGAATAT TAGGTTATCA ATTTCAGCAG
ATCGCGCTGC TGGAGCAGGC GTTAACTCAC CGCAGTGCGG CGAGCAAGCA TAACGAAAGA
CTGGAGTTTT TAGGCGACTC TATTCTCTCT ATCGTCATCT CTGACGCCTT GTATCATCAG
TTTCCCAAGG CGACCGAGGG TGACCTGAGC CGGATGCGCG CCACACTAGT GTGCGGCAAG
ATGCTAGCCG AGATCGCCAA GGAGTTTAAG CTTGGCGATT ATCTTAAGCT GGGCCCTGGT
GAGCTCAAGA GCGGTGGTTT TCGCCGCGAG TCTATCCTGG CCGACGCCAT GGAGGCGATC
ATAGGCGCCA TCTATCTGGA CGCCGATATC GAGACCTGTC GCACTTTAGT ACTAAACTGG
TATAAGAGCC GTCTTGCGGT GATCGAGCCG GTCAATCAGA AAGATCCCAA GACCCTGCTG
CAGGAGCACC TGCAGGGATT TAAGCAGCCG CTCCCTGTCT ATACAGTGGT GAACATCAGC
GGCGAAGCCC ATGCGCAAAC CTTCACCGTG GAGTGTAAGG TGGAGCAGCT AAAAGAAGCC
GTTATCGGCG TGGCCAATTC CCGCAGAAAG GCGGAGCAGA TTGCCGCAGC AGAAGTGTTG
GAGCGTATTA AGAAATGA
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| Protein sequence | MEPIKNLPRL GRILGYQFQQ IALLEQALTH RSAASKHNER LEFLGDSILS IVISDALYHQ
FPKATEGDLS RMRATLVCGK MLAEIAKEFK LGDYLKLGPG ELKSGGFRRE SILADAMEAI
IGAIYLDADI ETCRTLVLNW YKSRLAVIEP VNQKDPKTLL QEHLQGFKQP LPVYTVVNIS
GEAHAQTFTV ECKVEQLKEA VIGVANSRRK AEQIAAAEVL ERIKK
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