Gene Shew_1052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1052 
Symbol 
ID4922314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1214071 
End bp1215861 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content55% 
IMG OID640162585 
ProductGTP-binding protein LepA 
Protein accessionYP_001093182 
Protein GI127511985 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0481] Membrane GTPase LepA 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01393] GTP-binding protein LepA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000315171 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCATA TTAGAAACTT TTCGATTATT GCCCATATTG ACCATGGCAA ATCAACCCTT 
TCTGACCGTC TTATTCAAGA GTGCGGCGGC CTGTCTGACC GTGAGATGGC GGCGCAGGTA
TTGGACTCAA TGGATCTCGA GCGTGAGCGC GGCATTACCA TTAAAGCCCA GAGTGTGACT
CTCGATTACA AAGCTAAAGA TGGTGAAACC TACCAGCTGA ACTTCATCGA TACCCCTGGT
CACGTGGATT TCTCCTATGA AGTATCACGC TCGCTGGCTG CCTGTGAAGG TGCCCTCTTG
GTGGTCGATG CCGGTCAAGG CGTTGAGGCT CAGACCCTGG CAAACTGCTA TACCGCGCTG
GACATGGATC TGGACGTGGT GCCTGTACTG AACAAGATAG ACCTCCCCCA GGCAGATCCT
GAACGTGTCG CCGAGGAGAT CGAGGATATC GTGGGTATCG AGGCCGCCGA TGCGGTGCGC
TGCTCGGCCA AGACAGGTTT AGGTATCAGC GACGTGCTGG AAACTATCGT GGCTCAGATC
CCGCCACCAG AGGGCGACCC TGAAGCGCCG TTGCAGGCGT TGATCATCGA TTCTTGGTTC
GACAGCTACC TGGGCGTCGT TTCCTTGGTG CGTATCAAGC ACGGTGTGCT CAAGAAGGGT
GACAAGTTCA AGGTGATGTC GACCGGACAG ACCCATACGG CCGATCGCGT CGGTATCTTC
ACGCCTAAGC AGACAGACAC GGCTCAGCTG AGTACCGGTG AAGTAGGCTT CGTGATTGCG
GGTATCAAAG AGATCCACGG CGCGCCTGTG GGTGATACTT TGACGCTGGC CAAGAATGGC
GCCGACAAGC CGCTGCCTGG TTTTAAGAAG GTGAAGCCGC AGGTTTATGC CGGTGTATTC
CCAATCTCGA CCGACGACTA TGAGAACTTC CGTGACGCGC TCAACAAGCT GAGCCTGAAC
GATGCCTCAC TCTTCTTCGA GCCGGAAACC TCATCGGCAC TGGGTTTCGG TTTCCGTATC
GGTTACCTGG GTCTGCTGCA CATGGAGATC ATTCAGGAGC GTCTCGAGCG CGAATATAAC
CTGGATCTGA TCACCACGGC GCCGACCGTA GTCTACGAGG TGGTGACCAC CAAGGGCGAG
ACCATCTACG TCGATAACCC ATCGGATCTA CCGCCGATGA ACAACATCGA AGAGATGCGC
GAGCCTATCG TTGAGACCAA CATCCTAGTA CCAAAAGAGT ACCTGGGTAA CGTGATCACC
CTGTGTATCG AGAAGCGCGG CGTACAGACC AACATGGTCT ACCACGGCAA CCAGGTGGCG
ATCACCTATG ATATGCCGAT GGCCGAGGTG GTGATGGACT TCTTTGACCG CCTGAAGTCG
ACCAGCCGCG GTTATGCGTC GCTGGAATAT AACTTCAAAC GATTCGAGGC GGCAGACATG
GTGCGTCTGG ATGTACTGAT CAACGGCGAT CGCGTCGATG CCCTGGCGAT GATCCTGCAC
AAGGCCAACG TGCGTTACCA AGGCCTAGCC CTGGTAAACA AGATGAAGGA ACTTATCCCA
AGACAGATGT TCGATATCGC GATTCAGGCG GCCGTCGGCA GCCAGATCAT CGCCCGTTCA
TCGGTCAAGG CCCTGCGTAA AGACGTAACC GCTAAGTGTT ACGGCGGCGA CGTCTCCCGT
AAGAAGAAGC TGCTGCAGAA GCAGAAAGAG GGTAAGAAGC GCATGAAGCA GGTGGGTAAC
GTCGAAGTCC CACAAGAGGC CTTCCTCGCT GTGCTGAAGA TCAATGAGTA A
 
Protein sequence
MKHIRNFSII AHIDHGKSTL SDRLIQECGG LSDREMAAQV LDSMDLERER GITIKAQSVT 
LDYKAKDGET YQLNFIDTPG HVDFSYEVSR SLAACEGALL VVDAGQGVEA QTLANCYTAL
DMDLDVVPVL NKIDLPQADP ERVAEEIEDI VGIEAADAVR CSAKTGLGIS DVLETIVAQI
PPPEGDPEAP LQALIIDSWF DSYLGVVSLV RIKHGVLKKG DKFKVMSTGQ THTADRVGIF
TPKQTDTAQL STGEVGFVIA GIKEIHGAPV GDTLTLAKNG ADKPLPGFKK VKPQVYAGVF
PISTDDYENF RDALNKLSLN DASLFFEPET SSALGFGFRI GYLGLLHMEI IQERLEREYN
LDLITTAPTV VYEVVTTKGE TIYVDNPSDL PPMNNIEEMR EPIVETNILV PKEYLGNVIT
LCIEKRGVQT NMVYHGNQVA ITYDMPMAEV VMDFFDRLKS TSRGYASLEY NFKRFEAADM
VRLDVLINGD RVDALAMILH KANVRYQGLA LVNKMKELIP RQMFDIAIQA AVGSQIIARS
SVKALRKDVT AKCYGGDVSR KKKLLQKQKE GKKRMKQVGN VEVPQEAFLA VLKINE