Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1052 |
Symbol | |
ID | 4922314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1214071 |
End bp | 1215861 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162585 |
Product | GTP-binding protein LepA |
Protein accession | YP_001093182 |
Protein GI | 127511985 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0481] Membrane GTPase LepA |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01393] GTP-binding protein LepA |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000315171 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCATA TTAGAAACTT TTCGATTATT GCCCATATTG ACCATGGCAA ATCAACCCTT TCTGACCGTC TTATTCAAGA GTGCGGCGGC CTGTCTGACC GTGAGATGGC GGCGCAGGTA TTGGACTCAA TGGATCTCGA GCGTGAGCGC GGCATTACCA TTAAAGCCCA GAGTGTGACT CTCGATTACA AAGCTAAAGA TGGTGAAACC TACCAGCTGA ACTTCATCGA TACCCCTGGT CACGTGGATT TCTCCTATGA AGTATCACGC TCGCTGGCTG CCTGTGAAGG TGCCCTCTTG GTGGTCGATG CCGGTCAAGG CGTTGAGGCT CAGACCCTGG CAAACTGCTA TACCGCGCTG GACATGGATC TGGACGTGGT GCCTGTACTG AACAAGATAG ACCTCCCCCA GGCAGATCCT GAACGTGTCG CCGAGGAGAT CGAGGATATC GTGGGTATCG AGGCCGCCGA TGCGGTGCGC TGCTCGGCCA AGACAGGTTT AGGTATCAGC GACGTGCTGG AAACTATCGT GGCTCAGATC CCGCCACCAG AGGGCGACCC TGAAGCGCCG TTGCAGGCGT TGATCATCGA TTCTTGGTTC GACAGCTACC TGGGCGTCGT TTCCTTGGTG CGTATCAAGC ACGGTGTGCT CAAGAAGGGT GACAAGTTCA AGGTGATGTC GACCGGACAG ACCCATACGG CCGATCGCGT CGGTATCTTC ACGCCTAAGC AGACAGACAC GGCTCAGCTG AGTACCGGTG AAGTAGGCTT CGTGATTGCG GGTATCAAAG AGATCCACGG CGCGCCTGTG GGTGATACTT TGACGCTGGC CAAGAATGGC GCCGACAAGC CGCTGCCTGG TTTTAAGAAG GTGAAGCCGC AGGTTTATGC CGGTGTATTC CCAATCTCGA CCGACGACTA TGAGAACTTC CGTGACGCGC TCAACAAGCT GAGCCTGAAC GATGCCTCAC TCTTCTTCGA GCCGGAAACC TCATCGGCAC TGGGTTTCGG TTTCCGTATC GGTTACCTGG GTCTGCTGCA CATGGAGATC ATTCAGGAGC GTCTCGAGCG CGAATATAAC CTGGATCTGA TCACCACGGC GCCGACCGTA GTCTACGAGG TGGTGACCAC CAAGGGCGAG ACCATCTACG TCGATAACCC ATCGGATCTA CCGCCGATGA ACAACATCGA AGAGATGCGC GAGCCTATCG TTGAGACCAA CATCCTAGTA CCAAAAGAGT ACCTGGGTAA CGTGATCACC CTGTGTATCG AGAAGCGCGG CGTACAGACC AACATGGTCT ACCACGGCAA CCAGGTGGCG ATCACCTATG ATATGCCGAT GGCCGAGGTG GTGATGGACT TCTTTGACCG CCTGAAGTCG ACCAGCCGCG GTTATGCGTC GCTGGAATAT AACTTCAAAC GATTCGAGGC GGCAGACATG GTGCGTCTGG ATGTACTGAT CAACGGCGAT CGCGTCGATG CCCTGGCGAT GATCCTGCAC AAGGCCAACG TGCGTTACCA AGGCCTAGCC CTGGTAAACA AGATGAAGGA ACTTATCCCA AGACAGATGT TCGATATCGC GATTCAGGCG GCCGTCGGCA GCCAGATCAT CGCCCGTTCA TCGGTCAAGG CCCTGCGTAA AGACGTAACC GCTAAGTGTT ACGGCGGCGA CGTCTCCCGT AAGAAGAAGC TGCTGCAGAA GCAGAAAGAG GGTAAGAAGC GCATGAAGCA GGTGGGTAAC GTCGAAGTCC CACAAGAGGC CTTCCTCGCT GTGCTGAAGA TCAATGAGTA A
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Protein sequence | MKHIRNFSII AHIDHGKSTL SDRLIQECGG LSDREMAAQV LDSMDLERER GITIKAQSVT LDYKAKDGET YQLNFIDTPG HVDFSYEVSR SLAACEGALL VVDAGQGVEA QTLANCYTAL DMDLDVVPVL NKIDLPQADP ERVAEEIEDI VGIEAADAVR CSAKTGLGIS DVLETIVAQI PPPEGDPEAP LQALIIDSWF DSYLGVVSLV RIKHGVLKKG DKFKVMSTGQ THTADRVGIF TPKQTDTAQL STGEVGFVIA GIKEIHGAPV GDTLTLAKNG ADKPLPGFKK VKPQVYAGVF PISTDDYENF RDALNKLSLN DASLFFEPET SSALGFGFRI GYLGLLHMEI IQERLEREYN LDLITTAPTV VYEVVTTKGE TIYVDNPSDL PPMNNIEEMR EPIVETNILV PKEYLGNVIT LCIEKRGVQT NMVYHGNQVA ITYDMPMAEV VMDFFDRLKS TSRGYASLEY NFKRFEAADM VRLDVLINGD RVDALAMILH KANVRYQGLA LVNKMKELIP RQMFDIAIQA AVGSQIIARS SVKALRKDVT AKCYGGDVSR KKKLLQKQKE GKKRMKQVGN VEVPQEAFLA VLKINE
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