Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1051 |
Symbol | |
ID | 4920948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1213486 |
End bp | 1213962 |
Gene Length | 477 bp |
Protein Length | 158 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640162584 |
Product | positive regulator of sigma E, RseC/MucC |
Protein accession | YP_001093181 |
Protein GI | 127511984 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3086] Positive regulator of sigma E activity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000179706 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGAAG AAACCGCCAC AGTGATCAGG TGCCCGGGCG ATGGCTGGGT CACGGTCGAA GTGAAAGTTA AAAATGCCTG TAATCATTGC GACAATAATG ACACCTGCGG CACCTCTGCC GTGTCTAAGG CGTTCTCGCC CAAGGTGCAG CGCTTCTCGC TGCCTAGCGA CACCCAGTAT GAACCCGGTG AGCTGTTAAA ACTTGGTCTG CCCGAGAGCG TGATCTTAAA GGCGGCCGCC ATCGTCTATC TTATGCCGCT GGCTGGCTTG TTTATTGGTG CCACATTAGG GCATTTCCTC GCTGGCCTGG CAGAACTCGT GAGCAGCGAT CTGCTGACTA TCGCCCTTGG TCTGAGCGGC GCGGCAAGTG CCTGGTGGCT GGGTCGGCGC TGGGCAAAAA CGCTGGAGAT CAACAGTCAG CCGGTGATCC TCTCTCGCCT TGGTCGGGCC ATAGACGGTA TTTCCCCAGC CAACTAG
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Protein sequence | MMEETATVIR CPGDGWVTVE VKVKNACNHC DNNDTCGTSA VSKAFSPKVQ RFSLPSDTQY EPGELLKLGL PESVILKAAA IVYLMPLAGL FIGATLGHFL AGLAELVSSD LLTIALGLSG AASAWWLGRR WAKTLEINSQ PVILSRLGRA IDGISPAN
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