Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1042 |
Symbol | nhaA |
ID | 4924235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1206202 |
End bp | 1207377 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162575 |
Product | pH-dependent sodium/proton antiporter |
Protein accession | YP_001093172 |
Protein GI | 127511975 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3004] Na+/H+ antiporter |
TIGRFAM ID | [TIGR00773] Na+/H+ antiporter NhaA |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.12391 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGG CGATTAGAAA TTTTCTGAGC CAGGAATCGG CCGGTGGCAT CTTACTGATG GCGGCCGTTA TCTTGGCGAT GATCATGGCG AACTCCCCGT TGTCGGGCCT GTATCAAGGC TTCCTGCACA CAGAGATGCA GGTGCGCGTG GGCAGTCTGG ACATTGATAA GACGCTGATC CACTGGATTA ACGACGGCCT GATGGCGTTG TTTTTCATGT TGATCGGCCT GGAAGTGAAG CGTGAGCTGC TGGAAGGCGC TCTGTCGAGC CGTGAGCAGG CATCCTTGCC AACCTTTGCC GCTATAGGTG GCATGATCTT CCCTGCGGCG ATCTACCTGA TCTTTAACTA TGCCGACCCT ATTACTCAGG TGGGCTGGGC TATTCCTGCC GCTACCGATA TCGCCTTCGC GCTGGGTATC ATGGCGCTGC TGGGTAGCCG AGTGCCGGTG GCGCTTAAGG TGTTCCTGCT GGCGCTGGCC ATCATAGATG ACCTTGGTGT AGTGGTGATC ATCGCCATGT TCTATAGCAC AGATCTCTCT GCCATCAGCT TAGTCGTTGC CGCGTTGGCG ATAGTGATCT TGGTGGGGCT AAATCGTAAG GGCGTGACCG CGCTGGCTCC TTATGGGGTG GTGGGTCTGA TCCTCTGGAT AGCTGTGCTC AAATCTGGGG TACACGCTAC CCTGGCCGGT GTGATCATCG CATTCTGTAT TCCGCTGCGG GCCAAAGATG GTAGCTCACC GTCAGAGCAT CTGGAACATA GCCTGCACCC ATGGAGCACC TTTGTCATAT TGCCTATCTT TGCCTTTGCC AATGCAGGGG TCGATCTGTC GGGCATGAGC CTTGGGGATC TGTTATCGCC TGTGCCTGTG GGTATCGCAC TTGGCTTACT GCTGGGTAAA CCGCTTGGGG TACTGCTGTT TAGCTTCGTG GCGGTCAAGC TTAAGCTGGC TGCATTGCCC GAAGGCATGG GCTGGCGTCA TATCGCCCCC GTAGCCGTGA TGTGTGGTAT CGGCTTTACC ATGTCGATGT TCATCTCATC CCTGGCCTTT ATCGGCGATG GCGAGGCCTA TGGTGATCTG GCAAGGCTTG GCATTCTGAC CGGGTCAATT ATGTCGGCGG TGATAGGTTA TTTTTGGTTA TCTAAGGTGC TTCCAGAGAA AGGAGAAAAA TCATGA
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Protein sequence | MEKAIRNFLS QESAGGILLM AAVILAMIMA NSPLSGLYQG FLHTEMQVRV GSLDIDKTLI HWINDGLMAL FFMLIGLEVK RELLEGALSS REQASLPTFA AIGGMIFPAA IYLIFNYADP ITQVGWAIPA ATDIAFALGI MALLGSRVPV ALKVFLLALA IIDDLGVVVI IAMFYSTDLS AISLVVAALA IVILVGLNRK GVTALAPYGV VGLILWIAVL KSGVHATLAG VIIAFCIPLR AKDGSSPSEH LEHSLHPWST FVILPIFAFA NAGVDLSGMS LGDLLSPVPV GIALGLLLGK PLGVLLFSFV AVKLKLAALP EGMGWRHIAP VAVMCGIGFT MSMFISSLAF IGDGEAYGDL ARLGILTGSI MSAVIGYFWL SKVLPEKGEK S
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