Gene Shew_1042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1042 
SymbolnhaA 
ID4924235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1206202 
End bp1207377 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content55% 
IMG OID640162575 
ProductpH-dependent sodium/proton antiporter 
Protein accessionYP_001093172 
Protein GI127511975 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3004] Na+/H+ antiporter 
TIGRFAM ID[TIGR00773] Na+/H+ antiporter NhaA 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.12391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGG CGATTAGAAA TTTTCTGAGC CAGGAATCGG CCGGTGGCAT CTTACTGATG 
GCGGCCGTTA TCTTGGCGAT GATCATGGCG AACTCCCCGT TGTCGGGCCT GTATCAAGGC
TTCCTGCACA CAGAGATGCA GGTGCGCGTG GGCAGTCTGG ACATTGATAA GACGCTGATC
CACTGGATTA ACGACGGCCT GATGGCGTTG TTTTTCATGT TGATCGGCCT GGAAGTGAAG
CGTGAGCTGC TGGAAGGCGC TCTGTCGAGC CGTGAGCAGG CATCCTTGCC AACCTTTGCC
GCTATAGGTG GCATGATCTT CCCTGCGGCG ATCTACCTGA TCTTTAACTA TGCCGACCCT
ATTACTCAGG TGGGCTGGGC TATTCCTGCC GCTACCGATA TCGCCTTCGC GCTGGGTATC
ATGGCGCTGC TGGGTAGCCG AGTGCCGGTG GCGCTTAAGG TGTTCCTGCT GGCGCTGGCC
ATCATAGATG ACCTTGGTGT AGTGGTGATC ATCGCCATGT TCTATAGCAC AGATCTCTCT
GCCATCAGCT TAGTCGTTGC CGCGTTGGCG ATAGTGATCT TGGTGGGGCT AAATCGTAAG
GGCGTGACCG CGCTGGCTCC TTATGGGGTG GTGGGTCTGA TCCTCTGGAT AGCTGTGCTC
AAATCTGGGG TACACGCTAC CCTGGCCGGT GTGATCATCG CATTCTGTAT TCCGCTGCGG
GCCAAAGATG GTAGCTCACC GTCAGAGCAT CTGGAACATA GCCTGCACCC ATGGAGCACC
TTTGTCATAT TGCCTATCTT TGCCTTTGCC AATGCAGGGG TCGATCTGTC GGGCATGAGC
CTTGGGGATC TGTTATCGCC TGTGCCTGTG GGTATCGCAC TTGGCTTACT GCTGGGTAAA
CCGCTTGGGG TACTGCTGTT TAGCTTCGTG GCGGTCAAGC TTAAGCTGGC TGCATTGCCC
GAAGGCATGG GCTGGCGTCA TATCGCCCCC GTAGCCGTGA TGTGTGGTAT CGGCTTTACC
ATGTCGATGT TCATCTCATC CCTGGCCTTT ATCGGCGATG GCGAGGCCTA TGGTGATCTG
GCAAGGCTTG GCATTCTGAC CGGGTCAATT ATGTCGGCGG TGATAGGTTA TTTTTGGTTA
TCTAAGGTGC TTCCAGAGAA AGGAGAAAAA TCATGA
 
Protein sequence
MEKAIRNFLS QESAGGILLM AAVILAMIMA NSPLSGLYQG FLHTEMQVRV GSLDIDKTLI 
HWINDGLMAL FFMLIGLEVK RELLEGALSS REQASLPTFA AIGGMIFPAA IYLIFNYADP
ITQVGWAIPA ATDIAFALGI MALLGSRVPV ALKVFLLALA IIDDLGVVVI IAMFYSTDLS
AISLVVAALA IVILVGLNRK GVTALAPYGV VGLILWIAVL KSGVHATLAG VIIAFCIPLR
AKDGSSPSEH LEHSLHPWST FVILPIFAFA NAGVDLSGMS LGDLLSPVPV GIALGLLLGK
PLGVLLFSFV AVKLKLAALP EGMGWRHIAP VAVMCGIGFT MSMFISSLAF IGDGEAYGDL
ARLGILTGSI MSAVIGYFWL SKVLPEKGEK S