Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1040 |
Symbol | |
ID | 4924230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1204127 |
End bp | 1204921 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162573 |
Product | hypothetical protein |
Protein accession | YP_001093170 |
Protein GI | 127511973 |
COG category | [R] General function prediction only |
COG ID | [COG0730] Predicted permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0054225 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCACCA TAGTTGTCAG TTGTATTGCC CTGGGGGCCT TCATCGGTTT TATGGCGGGC CTGTTAGGTA TTGGCGGCGG CGTGATAGCC GTACCTGTAT TGCTGTTTCT TCTGCCCATG GCGGGCGTAG TGCCAGAGCA TTTGACCCAC GTGGCTATTG CCACCTCGCT GGCGGCGATC ATCCTAACCG GGGCCTCATC TGCCCGGGCC CATCATGCCC GCGGTAATAT TCCCTGGCAT CTACTTACCA TCATGCTGCC GGGTTTGATA GTCGGTGCCC TGTCCGCAGG CTTTATCTCC TCGCTGTTTT CCGCTCAGCT ACTCAAGCAA GTATTTGCCG GCTTCTTGGT GTTGATGGCG CTGCAGATGG TGTTTCCCTT TAAGGCGGCC GAGGGCGAGC GAAGCTTGCC CGCGAGTCCC TATCTGTTTG TTACCGCGAT GTTTGTCGCC ATCATAGCCG CACTAATGGG CATAGGCGGC GGCATCTTGT TTATCCCATT TTTGACTTGG TGCGGCGTGC AGATGCGTCA TGCCATAGGT TTCTCCTCTG TGACAGGGCT GATGATCGCC CTGTTTGGTA GCCTCAGCTA TGTGTTTGCT GGCTGGGCGA CTCAAGGGCT ACCCGAATAC ACCTTGGGCT ATATCTATCT GCCCGCCTTG TTCGGCATCG TCTGCACCTC TATGTTGACG GCGCCACTGG GGGCGAAGGC GGCCAGTGTC TGGCCGACGG CAAGACTGAA GAAAATCTTC GCCGTCATGT TATTCTTTAC CGGGATCAAG TTAGCCCTCA GCTAG
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Protein sequence | MFTIVVSCIA LGAFIGFMAG LLGIGGGVIA VPVLLFLLPM AGVVPEHLTH VAIATSLAAI ILTGASSARA HHARGNIPWH LLTIMLPGLI VGALSAGFIS SLFSAQLLKQ VFAGFLVLMA LQMVFPFKAA EGERSLPASP YLFVTAMFVA IIAALMGIGG GILFIPFLTW CGVQMRHAIG FSSVTGLMIA LFGSLSYVFA GWATQGLPEY TLGYIYLPAL FGIVCTSMLT APLGAKAASV WPTARLKKIF AVMLFFTGIK LALS
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