| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1039 |
|---|
| Symbol | |
|---|
| ID | 4920620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1201791 |
|---|
| End bp | 1204022 |
|---|
| Gene Length | 2232 bp |
|---|
| Protein Length | 743 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640162572 |
|---|
| Product | phosphoenolpyruvate-protein phosphotransferase PtsP |
|---|
| Protein accession | YP_001093169 |
|---|
| Protein GI | 127511972 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3605] Signal transduction protein containing GAF and PtsI domains |
|---|
| TIGRFAM ID | [TIGR01417] phosphoenolpyruvate-protein phosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00843837 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAGA CGCTCAGAGA CATTACTCAG GCCGTAGCCG CAGCCGATGA TCTTCAATCA
GCCCTCTCTT TGCTAGTCCG CCAGACCAAG TCGGCGATGG AGACACAGTG TTGCTCCATC
TATATCCTGG AAGAGCAGGA GCTGGTGTTG TCGGCCACCG ATGGCCTGGA CCCCAGAGCC
GTTGGCAAGG TCAAGATGCC CATGAGCCAG GGCTTGGTCG GCCTGGTGGC CGAACGCGAA
GAGCCGGTTA ACCTGGCCGA TGCCCAGCAA CACCCCAGAT TTAAGCTATT CACCGAAGTC
GACGAGGAAG ATTTTCGAGC CTTTCTCGCC GTCCCCATCA TCTATCAGAA ATTAATCCTA
GGCGTGCTGG TGGTGCAGCA GGCCGACGCG CGCCAATTTA GCGAGGCCGA AGAGGCCTTC
CTGATGACGC TCGCCGCCCA GTTGGCGGTG GCGGTGCGTG AGCAGCGTAA GAAAGCCGAG
GTGAAATCGG CGCCGGACAA GTGTGTCTAT ACCGGCACCT CGGCGGCTAG CGGCGTAGTG
ATCGCCCACG CCATGGTGCT GGGGGGCGAG ATCCCCTTAG AGCAGCAGGG GCGTCGCACT
AAGCAGGTCG ACGAAGAACT GCTAGCCCTG AGTCAGGCGC TGGATGCCTG TCGCAACACC
CTCAGCGCCC TGTCCCAGCG CTTCGATGGC GAGAATGAGA AAGAGGTGCA GTCTATCTTC
TCCGCCCTGC AACTGCTGCT GGATGATACC AGCCTTGGCG GTGAATATGG GCGGGAGATC
CAGGCGGGCT GGACGGCTAT CTCGGCGGTG AGCCGGGTGT CGCTGCGCTA CATAGATCAT
TTCCAGCAGA TGCAAGACCC CTACATGCAG GAGCGGGCGA CGGATATCCG CGATCTGGGC
CAGAGGGTGC TGCGTGAGCT GATCGAGCCG CAGAAGATGC AGCTGGAACT GGATGTGCCC
GTTATTCTGG TGACCAAGGA AGCCACAGCG ACCATGCTCG CCGAGTTCCC CCAGCACAAG
CTGGTGGGCA TAGTCACAGA GCTGGGTGGG GTTAACTCCC ACGCGGCTAT CTTAGCGCGC
GCTTTCGGCG TCCCGGCGGT GATAGGTGTC GAGGGGATCC TCAATGCCGG TATCGATGGC
AAGCAGCTGA TCCTCAACGC CAACCGCGGA CAGGTGCTGA TCTCGCCTAC ACCGACGCTG
ATAGGTGAGT ATCGCAGCCT GATCTCGGCG GAGAAGGCGC TGCAGAAACG CTATGCCGAG
GAGCTGTCTA AGCCTGCCAT GACCTTAGAT GAGCGCCGAA TTCATCTCTA CCTTAATGCC
GGACTGTTAA GCAGCCTGGC CTCGGAGATC GCCGAGGGCG CCGACGGCGT CGGCCTGTAT
CGCACCGAAA TCCCCTTCAT GTTGCAGACC CGCTTCCCCA GCGAGGCGGA GCAGGTCGAG
GTCTATCGTC AGGTGTTGAA TGCGGCGCTT GGGCGTCCCG TGGTGATGCG CACCCTGGAT
GTGGGCGGTG ACAAGCCATT GTCTTATCTG CCTATTATCG AGGAGAACCC TTTCCTCGGC
TGGCGCGGGA TCCGTCTGAC GTTGGATCAT CCCGAGCTGT TTCTGGTGCA GCTCAGAGCC
ATGCTCAATG CTTCGGGGGG CGGTGAGCAG CTGCATATTC TGCTGCCCAT GGTCTGCTGT
TTGGACGAGA TAGATCAGGC CATCGCCTAC CTGGAGCAGG CTTATCTCGA GGTGAAGCAA
GATGTTCATC CTGACCTGCA GCGGCCTAAG ATAGGCATAA TGCTGGAGGT GCCTGCGCTG
CTGTTCCAAC TCGAAGAGGT GGCCAAGCGG GTCGACTTTA TCTCTGTCGG CTCGAACGAC
CTGACCCAAT ACCTGCTGGC GGTCGATAGA AACAATCCTA GAGTCAGCAC GCTGTATGAC
TCCTATCATC CTGGGATCTT ACGGGCGCTG ACCCAGGCGA GGCTGGCGTG CCGAGAATAC
AGACTACCAA TAAGCGTCTG TGGCGAGCTG GCTGGCGAAC CCATGGGCGT ACTGCTGCTG
GTCGCCATGG GCTATACCCA GTTGAGTATG AATCAGGGCA GCCTGGCCAA GATCAACTAT
CTGATCCGCA GGGTGTCCTA TCAGGACTTG AGCGAGCTGC TTGCCCAGGC GCTGTCGCTG
ACCAACGGCT TCGAGGTGAG GGAACTGCTG ACGCTCTATC TGAAAGAGAA ATGCTTGGAT
GAATTCCTAT AA
|
|---|
| Protein sequence | MLKTLRDITQ AVAAADDLQS ALSLLVRQTK SAMETQCCSI YILEEQELVL SATDGLDPRA
VGKVKMPMSQ GLVGLVAERE EPVNLADAQQ HPRFKLFTEV DEEDFRAFLA VPIIYQKLIL
GVLVVQQADA RQFSEAEEAF LMTLAAQLAV AVREQRKKAE VKSAPDKCVY TGTSAASGVV
IAHAMVLGGE IPLEQQGRRT KQVDEELLAL SQALDACRNT LSALSQRFDG ENEKEVQSIF
SALQLLLDDT SLGGEYGREI QAGWTAISAV SRVSLRYIDH FQQMQDPYMQ ERATDIRDLG
QRVLRELIEP QKMQLELDVP VILVTKEATA TMLAEFPQHK LVGIVTELGG VNSHAAILAR
AFGVPAVIGV EGILNAGIDG KQLILNANRG QVLISPTPTL IGEYRSLISA EKALQKRYAE
ELSKPAMTLD ERRIHLYLNA GLLSSLASEI AEGADGVGLY RTEIPFMLQT RFPSEAEQVE
VYRQVLNAAL GRPVVMRTLD VGGDKPLSYL PIIEENPFLG WRGIRLTLDH PELFLVQLRA
MLNASGGGEQ LHILLPMVCC LDEIDQAIAY LEQAYLEVKQ DVHPDLQRPK IGIMLEVPAL
LFQLEEVAKR VDFISVGSND LTQYLLAVDR NNPRVSTLYD SYHPGILRAL TQARLACREY
RLPISVCGEL AGEPMGVLLL VAMGYTQLSM NQGSLAKINY LIRRVSYQDL SELLAQALSL
TNGFEVRELL TLYLKEKCLD EFL
|
|---|
| |