Gene Shew_1028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1028 
Symbol 
ID4920862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1186752 
End bp1187357 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content37% 
IMG OID640162561 
Producthypothetical protein 
Protein accessionYP_001093158 
Protein GI127511961 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.354619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.859767 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAATG TATTAATTCT TTATCCAAAG CTATTTAATT GCTACTCGAA GTTCTCGAGA 
AAAGTTTTGA AAATAACCTC GAGTCTTGGC GCAGCTACAT TGGTGTATCC AGATGATCCA
AATGGTTTAA TTGAAAAGTT CTGTGAAGAA AGCTCAGGAA AAATGACAAA TAAAGAATTT
CCTAACTGGA CTCCTGACGA CATAACTCAT GCCATTATTT TCGACGATGG TGAAGAGTTT
ATAGAAGAAA CAGAGCGATT AAAAGAAAGT AAAAAACCAT TAAGGTTAAT TGGAATTTGC
ATAACACGAG TTATAAATAT CAAGACTGAG ACGGAATACC AATCAGAGAA AAGCACTCCA
ATTTATGAGT ATATCGGAAG GGGTTCTTAT TGGGGAAACC CTTACTCTAT GTTTGAGGAG
GGGGAAGATC GTGAAGAAGT TATAAGAAAG TACAAATACG ACTTTGATTT TGAGAAATTC
CCAAATAAGG AAAAGTCTGA AGTGTACAAG TTAGCAGGAA AGCGCTTGGG CTGCTTTTGC
AAGCCGCAAG CCTGTCACGG TGATGTCCTT GCAGACTTTC TTAATTCGTG GGATGACGGC
AAGTAA
 
Protein sequence
MNNVLILYPK LFNCYSKFSR KVLKITSSLG AATLVYPDDP NGLIEKFCEE SSGKMTNKEF 
PNWTPDDITH AIIFDDGEEF IEETERLKES KKPLRLIGIC ITRVINIKTE TEYQSEKSTP
IYEYIGRGSY WGNPYSMFEE GEDREEVIRK YKYDFDFEKF PNKEKSEVYK LAGKRLGCFC
KPQACHGDVL ADFLNSWDDG K