Gene Shew_1027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1027 
Symbol 
ID4923810 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1185380 
End bp1186072 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content57% 
IMG OID640162560 
Productmethylthioadenosine nucleosidase 
Protein accessionYP_001093157 
Protein GI127511960 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0775] Nucleoside phosphorylase 
TIGRFAM ID[TIGR01704] 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.767246 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATTG GTATTATCGG CGCCATGGAG CCAGAAGTCG CTCATCTTAT CGCGTCTATG 
ACAGACACTC AGACCCAGAC CATCGCCGGC ATAGAGTTTG TCGCCGGGCA GCTTGAGGGC
AAAGAGGTGA TCGTCACCCG CTCTGGCATC GGCAAGGTCA CCGCCAGTGT CGCCACCACA
TTGCTGATTG AGAAATATGC CCCGGATTAT GTGATCAACA CAGGCTCGGC AGGCGGCTTC
GTCGACAGCC TGGCCATCGG CGATATCGTT ATCTCCTCAG AGGTGCGCCA CCACGACGTG
GACGTGACCG CCTTCGGCTA CGAGATAGGT CAGATGGCTC AGCAACCGGC AGCCTTCATG
CCTGACAGAA CTCTGGTCGA GGCGGCCAAG AAGGCGGTTG CGGATCTGGG CGAGGTGAAG
GCTATCGAGG GACTTATCTG CACCGGCGAC AGCTTTATCT GCGACCCTGA GCGCACTAAG
GTGATGCTGA ATAATTTCCC GACCATGGCG GCCTGTGAGA TGGAGGGCGC TGCGATTGCC
CAGGTGTGTC ACCAGTTCAA GGTGCCTTTC GTGGTGATTC GCTCGCTGTC TGACAACGCC
AACAACGACT CGCCGGTAGA TTTTGACAGC TACCTGGTGA AGGCGGGCCA TCATTCGGCG
CTGATGGTGA TCTCGCTGCT GAAACACCTG TAA
 
Protein sequence
MKIGIIGAME PEVAHLIASM TDTQTQTIAG IEFVAGQLEG KEVIVTRSGI GKVTASVATT 
LLIEKYAPDY VINTGSAGGF VDSLAIGDIV ISSEVRHHDV DVTAFGYEIG QMAQQPAAFM
PDRTLVEAAK KAVADLGEVK AIEGLICTGD SFICDPERTK VMLNNFPTMA ACEMEGAAIA
QVCHQFKVPF VVIRSLSDNA NNDSPVDFDS YLVKAGHHSA LMVISLLKHL