| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1021 |
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| Symbol | |
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| ID | 4923527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1179811 |
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| End bp | 1181286 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162554 |
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| Product | peptidase M23B |
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| Protein accession | YP_001093151 |
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| Protein GI | 127511954 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000137565 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAAGA TCATCACACT CTTAAAACTA TTACCCAGAT TGCATCAAAT CATATTGAGT
GTCTTAGTGA TGATCACCAT AGGCGCGATA TTTATCCCCT CCGACGATGC CGAGGCCTCC
CGTTCAACCA ACACCTCGTT AACGGGCAAG ATTCGCCTTG GCGAACAAGC AGGTAGCGGC
GCATCAGGCG AAAACACCAC TAACGACACC AAGACAAACG GCTATGCCTA CCCCGTGCCC
CTCGCCTTTC GCACGCCCGA GCCCCCCAGC GCCGATGAGA TCGCCCGTAA TACCCAAGAG
AGCGGCAGCC TAGACCTTAA CGGAAGCCTA GATCTCAATG AGAGCGCTCT GACCCAGGTC
ACCGACAACC CAGTCGTCGA GCCCGAAGAG GAAAGAGAAA GCAGCGAGGA GTTTACCGTG
CGCAGCGGCG ACACCCTTGC CGCCCTGTTT AAACGCGCCG GACTCACGGC CCGCGACGTG
TATGAGATCA CCCAGCTCCC CAAGGCCAAG AAGAACCTGT TGAAGATCAT GCCCGGCGAA
GAGATCATTA TCGTCAAAGA TGATGCCGGT CAGCTCAAGC GTGTGGTCTA TCATCTTGAC
CCCATCTCGA CCCTGAAGAT CTGCAAGGAC GATAAGGGCT ACAGCGAAGA GATCATCAAG
AAGACGGTGG AAAGCCGCAC CAAATTTGCC AGCGCCACCA TCAGCAGCAA CTTTTGGAAC
GCCGGTGTCG GCGCCGGGCT GACGCCCAAC CAGATCATGC AGCTGGCCAC CATCTTTGGC
TGGGATATCG ACTTTGCCCT GGATCTGCGC CAGGGCGACA ACTTCGCCAT CCTATTTGAA
GAGGAGTACG CCGACGGCGA GTTCCTGCGT AACGGCAATA TCCTGGCCGC CGAGTTCTAC
AACCAGGGCG ATCGCTATAC GGCGGTGCGC TACAAGGACG GCAACTACTA TTCCGACGAG
GGGCGCAGCA TGCGTAAGGC CTTCCTGCGC TCGCCGGTGG ACTTCAAGTA TGTCAGCTCC
AGCTTCAACC CACGCCGCCT CCACCCGGTC ACGGGTCAGG TCAAGGCACA CCGCGGTGTA
GACTATGTGG CTGCCGTCGG CACCCCCATC AAGGCCGCGG GTAAGGGACG GGTGATCAAG
TCCGGTTACA ACCAATACAA TGGTAATTAT GTCTTCATCA AACATAATGA GACCTATACC
ACCAAGTATC TCCATCTTAA AAAACGTAAG GTCAAGCAGG GCCAGACGGT GAAGCAGGGG
CAGATCATCG GCACCCTGGG CTCGACCGGC CGCGTGACAG GCGCTCACCT GCACTATGAG
TTTATCGTTA ACGGCGTGCA TCGCAATCCA CGTACGGTCA AGCTGCCGCA ATCTCTGCCC
ATAGACAGCA AGGAAAAATC CAGCTTCCTC GCCCTGAGTA AGCAATTGAT GGCTAAACTT
GAACAGAACA AGCAAGTGCA ATTGGCCTCC CAGTGA
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| Protein sequence | MGKIITLLKL LPRLHQIILS VLVMITIGAI FIPSDDAEAS RSTNTSLTGK IRLGEQAGSG
ASGENTTNDT KTNGYAYPVP LAFRTPEPPS ADEIARNTQE SGSLDLNGSL DLNESALTQV
TDNPVVEPEE ERESSEEFTV RSGDTLAALF KRAGLTARDV YEITQLPKAK KNLLKIMPGE
EIIIVKDDAG QLKRVVYHLD PISTLKICKD DKGYSEEIIK KTVESRTKFA SATISSNFWN
AGVGAGLTPN QIMQLATIFG WDIDFALDLR QGDNFAILFE EEYADGEFLR NGNILAAEFY
NQGDRYTAVR YKDGNYYSDE GRSMRKAFLR SPVDFKYVSS SFNPRRLHPV TGQVKAHRGV
DYVAAVGTPI KAAGKGRVIK SGYNQYNGNY VFIKHNETYT TKYLHLKKRK VKQGQTVKQG
QIIGTLGSTG RVTGAHLHYE FIVNGVHRNP RTVKLPQSLP IDSKEKSSFL ALSKQLMAKL
EQNKQVQLAS Q
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