Gene Shew_1006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1006 
Symbol 
ID4920785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1163002 
End bp1163943 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content57% 
IMG OID640162539 
ProductErfK/YbiS/YcfS/YnhG family protein 
Protein accessionYP_001093136 
Protein GI127511939 
COG category[S] Function unknown 
COG ID[COG1376] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.14472e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGTA AATTGCTGTT GCTCATCTTG AGTCTCGCAC CACTGCAGTT ACTTGCTAAT 
GTCTATTCCC TGCCGGCCAA TGGCGGCCGC CTCATCGGTG AGCTGCAGAC CCATGTGGTC
GAGAAGGGCG ACTACTTCAA AACCATCGCC GATAAATACA ATATCGGTAT CTTGGAGTTG
ATGGAAACCA ATCCTGGGGT GGATCCTTTC CTGCCGACTC CGGGCACCCA GTTAGTGATC
CCCACCCAGA TGTTGCTGCC GGATGTGCCG CGCAAGGGCA TAGTGATCAA CCTGCCGGAG
CTGCGTCTCT ACTATTTCCC TAAGAATGGC CGCGAGGTGC ATGTCTTCCC CGTGGGCATT
GGCCGTATCG GCCGTGAAAC CCCAGAGATG ACCACCAAGA TTAAGGCGCG TATCCCTAAT
CCGAGCTGGA CACCGCCGGC GAGCCTGCGC GCCGAGCACC TGCGTGAGCG CGGCGAGGTG
TTGCCGCCCG TGGTGCCTGC TGGCCCGGAT AACCCACTGG GTAAATACGC CATGCAGCTC
TCCTATGGCG ATGGCAGCTA CCTGATCCAC GGCACCAACA AGGATTTCGG TATCGGCATG
CGCGTCAGCG CCGGCTGTAT CAGACTCAAC CCAGATGATA TAGAGTGGTT GTTCCATCAG
GCCAAATATG GCGACAGCGT GCGGGTGATC AACCAAACGG TAAAGATTGC TACCGAGCCC
GATGGCCGTC AGATCATCGA GGTGCATTCG CCCCTGTCAA AGACGGAAGA TCAGCCCCGT
GAGAAGGTGA TCAGCCTGAG CAGCAAGGTG GTGAAATTTA TCAGCCAGGA AAGCGTCGAC
AACACCAAGG CAAACGATGC CCTGCTGACC CAGAACGGCA TCCCTATGGT GATCTCACAT
CCACCGCTAA CGGCGGCTCA GGATTTAGAG ATCACTCCCT AG
 
Protein sequence
MMRKLLLLIL SLAPLQLLAN VYSLPANGGR LIGELQTHVV EKGDYFKTIA DKYNIGILEL 
METNPGVDPF LPTPGTQLVI PTQMLLPDVP RKGIVINLPE LRLYYFPKNG REVHVFPVGI
GRIGRETPEM TTKIKARIPN PSWTPPASLR AEHLRERGEV LPPVVPAGPD NPLGKYAMQL
SYGDGSYLIH GTNKDFGIGM RVSAGCIRLN PDDIEWLFHQ AKYGDSVRVI NQTVKIATEP
DGRQIIEVHS PLSKTEDQPR EKVISLSSKV VKFISQESVD NTKANDALLT QNGIPMVISH
PPLTAAQDLE ITP