Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0996 |
Symbol | |
ID | 4923261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1153477 |
End bp | 1155327 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640162529 |
Product | RpoD family RNA polymerase sigma factor |
Protein accession | YP_001093126 |
Protein GI | 127511929 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0289616 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATCTA TGGAGCAAAC TCCGCAGTCG CAACTTAAAT TGTTGCTTGC CAAAGGTAAA GAGCAAGGTT ATTTAACCTA TGCAGAAGTG AACGATCACT TGCCTGCAGA TATGGTCGAC TCAGACCAGA TCGAAGATAT TATCCAGATG ATTAATGACA TGGGTATTCG CGTCTATGAG CAGGCGCCGG ATGCCGATGA GATCATGATG TCTGAAGACA GCACCGATGA AGATGCTGCC GAAGAAGCTG CCGCGGCTCT GGCTACGGTT GAAGCTGAAC TGGGTCGTAC CACAGATCCC GTGCGTATGT ACATGCGCGA GATGGGTACG GTAGAACTTC TGACCCGCGA AGGCGAAATC GTAATCGCCA AGCGTATCGA AGAAGGTATC AACACGGTTC AGGCGTCTGT AGCCGAATAT CCTCAAGCGA TCGCCATGAT CCTTGAGCAG TACGACCGCT ACGAAGCTGA AGAAGTCAGA CTATCAGACA TTATCTCTGG ATTTGTTGAC CCTAATGCCG AAGACATGGC GCCGACGGCG ACCCATATCG GCTCAGAATT GTCGGACGAC GATCTCGACG ACGAAGATGA CGAGGGCGAT GACGAGGACG ATGACGGCGA TGAAGAAGAT TCGCCAAAAG GCCCGGATCC GGAAGAAGCG CGCGAGCGTT TCACCCAGCT GCGTGAAGCA CACGAAAAAG CCTTAAAAGT GATTGAACTT AAAGGTCGTG AACACCCAGA AGCGACTGCC GCCCTGTTCG ACATTGGCGA GATCTTCAAA GAGTTCCGTC TGGTACCTAA GCAGTTCGAC CGCCTGGTGA AGAACATGCG CGAAATGATG GACAAGGTGC GTATTCAAGA GCGCCTCATC ATGAAGCTGT GTGTCGAGCA GGCCAAGATG CCGAAGAAGA ACTTCGTTAA GGTCTACACC TCTAACGAGA GCAGCATCGA ATGGTTCAAC GAAGAGATTG CCGCCAAGAA GCCCTATGCC GAAGGGCTGG AGATGGTTGC CGAAGACGTT CAACGTTGCC GCGCCAAGCT CGATGCCATC GAGAATGAAA CCGGCCTGGC CATTGCCGCC ATCAAGGATA TCAACCGTCG CATGTCTATC GGTGAAGCCA AGGCTCGCCG CGCTAAGAAA GAAATGGTTG AGGCTAACCT GCGTCTGGTA ATTTCTATCG CGAAGAAATA CACCAACCGT GGCCTACAGT TCCTGGATCT GATCCAGGAA GGTAACATCG GCCTGATGAA GGCGGTAGAC AAGTTTGAAT ACCGTCGTGG TTACAAGTTC TCGACCTATG CAACCTGGTG GATCCGTCAG GCGATCACGC GTTCGATTGC CGACCAGGCA CGTACCATTC GTATCCCGGT TCATATGATT GAGACCATCA ACAAGCTCAA CCGTATCAGC CGTCAGATGC TACAAGAGAT GGGACGCGAG CCGTCACCTG AAGAGCTGGC CGAGCGCATG TTGATGCCGG AAGATAAGAT CCGCAAGGTA CTCAAGATCG CCAAAGAGCC TATCTCAATG GAAACCCCTA TCGGCGATGA TGAAGATTCG CATTTAGGTG ATTTCATCGA GGATACTACC CTCGAGTTGC CACTGGACAG CGCCACCGGT GAGAGCCTGA AGAACGCCAC CCACGAAGTG CTCGCCGGCC TGACCGCCCG TGAAGCCAAG GTTCTGCGCA TGCGTTTCGG TATCGATATG AACACCGACC ACACCCTAGA AGAAGTGGGC AAGCAGTTTG ACGTGACCCG TGAGCGTATT CGTCAGATCG AGGCCAAGGC ACTGCGTAAG CTGCGTCACC CGTCTCGCTC AGAGATCTTG AAATCCTTCC TGGATGAATA G
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Protein sequence | MISMEQTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVYE QAPDADEIMM SEDSTDEDAA EEAAAALATV EAELGRTTDP VRMYMREMGT VELLTREGEI VIAKRIEEGI NTVQASVAEY PQAIAMILEQ YDRYEAEEVR LSDIISGFVD PNAEDMAPTA THIGSELSDD DLDDEDDEGD DEDDDGDEED SPKGPDPEEA RERFTQLREA HEKALKVIEL KGREHPEATA ALFDIGEIFK EFRLVPKQFD RLVKNMREMM DKVRIQERLI MKLCVEQAKM PKKNFVKVYT SNESSIEWFN EEIAAKKPYA EGLEMVAEDV QRCRAKLDAI ENETGLAIAA IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE PSPEELAERM LMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATG ESLKNATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPSRSEIL KSFLDE
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