| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0980 |
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| Symbol | |
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| ID | 4922360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1127012 |
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| End bp | 1130527 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162512 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001093110 |
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| Protein GI | 127511913 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCGAC AGATTTCACG CTTATCTTCT CTCTTTGGCG GACGCTCACT GCTGCTGGCC
GCCTCCATGC TGGTGCTTAT GGTGGCGCTT GTCATCATCG CCAGCTTCGA ATCTCAATTA
AATCAGAATA TTGTCGACGG TCTGCGCTCC GATCTCGAGA TTCAGAGCGA GCAGGTCAAC
AATCAGGCCC AGGACAGGCT TAACCGTTAC TTCAACAACC TACGTTTTCT GTTTGAGACC
CCGCCTATCT CCGGCCTTTC CCGGGCCAGA AATAATCAGG GGATCGACCC TGTGGACGAG
ACCCGCTACG ACCAGTGGCG TCACCGACTG GAAACTATCT TCGTTGCCTT CTTACAGAAC
AATCGCGAGT ATGAACAGCT GCGCATATTG AGCAGTGATG GCATGGAGCT TATCCGGGTA
GACAGGCGCG GCGGCGCCGT GCAGGTGATA GATGATACTA ACTTGCAAGA CAAGCAGGGG
CGGGATTATT TTCAGGCCAG TAAAGATCTG CAGCAGGGGG AGATCTATAC CTCGCCCATC
AACTTAAACC GTGAGTTTGG CAAGATAGAT TATCCCTACC GCCCCATGTT GCGTCTGGCA
ACCCCGATCT TCGATGACAA CGGCGGTCAC TTCGGTCTGC TTATCGTCAA CATCAATGCC
AACGCTCTAC TCTCCTCTTT CAAGCGCCTG GTGCCTGCGC CCATAGAGCT TGTGCTGACC
GACAGCGATG GCTATTTCTT GGTGCATCCC GATGAGGAGA TGCGTTTTAG CCGCGACCTG
CATCCAGACC TGGTGTGGGA TAAACATTAT CAGCAGAGCA AGACACTTAA GCGTAACTTC
GAGTTGGTGC TCGACAGCTA TCACGATAAT AAGCCCTATT ATGCCTATCG CCGCGCCATC
ACGCTCTCTA ACGATGCCCA GAGCGGTCGG CTTACCGCGA CCCTAATGGC GCCCAAGCAA
TATGTGCAGG AACTAGCGGT CTCCCGGCGC ATCAGTGTCT ACAGCTTCAT GTTGGCCGTG
GGAGTCTTGT TTCTGTTTGT GGTCATCATA CTGGGGCGCA GCGCCCGTAG CAGTCAGGCG
CTGGCCAAGG AGAAGGCGCA GTCGGCGGCG ATCATCGATG GCTCCAAGGA TGCCATCATA
GGCGTGGGTA CCAGCGGCGT GGTCAACAAC TGGAACCGCG CCGCCGAGTT ACTGTTTGGC
TATGACGCCG ACTACGCCAA GGGCCACTTT ATCAATCAGC TGGCGCTGCT GCCCGAGGTC
GACCTGGCGG CCTTGGTCTC AAAGGCTAAT CAGGGTAACA AGACACTTAA TCTGGACGCC
GAGCTGCCAT TGAACGAGGG GCGCATCGTC GATCTCTATG TGTCGGTTTC CCCCATCCTG
GGGGAGAACA AGCATGCCCT GGGCGTGGCC ATCATCATAC GTGATGTCTC CATCGAGAAG
CAGGCGGCCA AGAAGATCCA GCTGGTGAAC GCCGAGCTCG AGAAGAAGGT GGCGATAAGA
ACCCAGGAGC TGCAGAAGGC CAGCCTAGTG AAGAGCAGCT TCATCTCTAA CATCAGCCAT
GAGATGCGTA CGCCGCTAAA TGGCATAGTA GGTACTTTGA ATCTGGTGCG TAAAGACTCG
CTTACCGAGC GCCAGGCGAG GTACCTGGAG ATGGCCGAGG TGAGCGTTAA TACGCTTTCT
GCGCTGATTA ACGATGTGCT GGATCTTTCC AAGATAGAGG CGGGCAAGCT GGATTTAGAC
ATGAGCAGCT TTAATCCCCT CAACCTGATC GAGAGTGTCT GCAGCAGCAT GGCGGTGAAG
GCCCAGGAGA AGGGGATAGA GTTTGTCATC GATGTGGTCG ACCTTCGCTG CCAGAGCGTA
GACAGCGACC CCCACAGGAT CACTCAGATC CTCACCAATC TGATAAACAA TGCCATCAAA
TTTACCGACC ATGGCTATAT CAAGGTCAGG GCCCACAGCC GCCTCCGAGA GACGGGGGAG
CTAGAGTTTA TCTGTGAGGT GTCTGACACA GGGATAGGGA TCGCCGAGGA GAATCAGGCC
AAGCTGTTTA CCGCTTTCTC TCAGGCCACT TCGAGTATTG CGGCCCAGTA TGGTGGCACA
GGGCTGGGAC TCTCTATCTG TAAGGAACTC AGCGAATTAC TCAACGGCAA GATGAGTTTC
GAGTCCCACA AAGGGCAGGG GAGCTGCTTC ATCTTCACCA TGGTGTTGCA TCAGGGCGAG
TTTAAGCTGA TGGCGCCCGA GGCGCTGCTG CACGAGATGA CCTGTAGCGT CTTGCTGGTG
AATGAGGCGC AGCAGGCCTG CGTCGAGGCG GCAATTGCCC GGCTCGGTGG TAAGCTGCTA
CCGGGCTCGC CCATACGCGA CTGGCTCAAT CAGGATGCTC CCGTACCCGA TGTTCTGCCC
CACGTGTTAA TCGTGGAGCA GCGTCACTCC CTGCTTACCG ATCTCGACAG TCTCTGGCCG
ACACTGACGG CGACTCATAA GCGACTGCCG AGAGTATTGG CCTTTCAAAA GAGCGCCGAT
GGCAATAAGG CGCTGAGAAA TATTGAGCTT GAGTATCTCA ATAACCCGCT GCTCTTCTCC
GAATTTATGC AGAAGTTTGG CGCGCCCAAA GCGAGTTCTG GCGTAGAAAA TGTTCATCCC
CAAGTGACTC CCATAATCTC TGAGGAGGAG GCCCATCGCA TCAAAGGTGC TCGGGTGTTG
GTGGTCGATG ATAATGAGAT CAACATAGAG GTTGCCCTGG GGATCTTGTC CGAGCTGCCG
CTGGAATTTG TCAGGGCCAT CAATGGTCAG GAGGCGTTAA CCAAGCTGAG GGAGTGCGAG
CAAGAGGGGC TGGGCGTGCA TTGCATCTTG ATGGACTGTC AGATGCCGAT CCTCAATGGC
TATGACTGTA CCCGGGCGAT CCGTGCCGGG GAAGCGGGCG AGGCGTTTGT CGATACGCCC
ATTATTGCCA TGACGGCCAG TGCCATGATG GGCGAGCGTG ACAAGTGCAT CGAGGCGGGC
ATGAATGACT ATATCACCAA GCCTATCGTG GCCGAGCGTC TGCAGGAGAA AGTGACCGAT
TGGCTGATCT CTGTCTGTGA GTTTGGTGAC TTGCCTACTT TAGTTGAGGC TGCGCCCCAT
GAGGAGATCC AAGTAAAGGA TGAGGACTAT GTCTGGAACC GTCAACTGGC CCTCAGCCGG
TTGATGAACA ATGAGGTGCT GTTCGCCGAG ATCTGCCAGA TGTATCACGA CACGTCGCCG
GCACAAGTTG GCGAGCTGGA GGAGGCGATC GCCGCTAAGG ATTATGAGAA GGTGCGTCAG
CTCAGTCATG GCCTCAAGGG GCTCTCCAGC AGCATAGGTG CCATCCAGCT ACAGGAGCAG
TTTTTGAGCC TGGAGATGGA GGCGAAGATG AAGAACTGTG ATAAGTTGAA TCTACTCTTC
GGGGTAATAA AACCTTGCTA TGCCAAGCTC ATGGAGCGGC TGCAGGAGAC GCTCGAGCCC
AAGGATGAGG TACAAAACGC GTCTGCCCAG ACTTAG
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| Protein sequence | MVRQISRLSS LFGGRSLLLA ASMLVLMVAL VIIASFESQL NQNIVDGLRS DLEIQSEQVN
NQAQDRLNRY FNNLRFLFET PPISGLSRAR NNQGIDPVDE TRYDQWRHRL ETIFVAFLQN
NREYEQLRIL SSDGMELIRV DRRGGAVQVI DDTNLQDKQG RDYFQASKDL QQGEIYTSPI
NLNREFGKID YPYRPMLRLA TPIFDDNGGH FGLLIVNINA NALLSSFKRL VPAPIELVLT
DSDGYFLVHP DEEMRFSRDL HPDLVWDKHY QQSKTLKRNF ELVLDSYHDN KPYYAYRRAI
TLSNDAQSGR LTATLMAPKQ YVQELAVSRR ISVYSFMLAV GVLFLFVVII LGRSARSSQA
LAKEKAQSAA IIDGSKDAII GVGTSGVVNN WNRAAELLFG YDADYAKGHF INQLALLPEV
DLAALVSKAN QGNKTLNLDA ELPLNEGRIV DLYVSVSPIL GENKHALGVA IIIRDVSIEK
QAAKKIQLVN AELEKKVAIR TQELQKASLV KSSFISNISH EMRTPLNGIV GTLNLVRKDS
LTERQARYLE MAEVSVNTLS ALINDVLDLS KIEAGKLDLD MSSFNPLNLI ESVCSSMAVK
AQEKGIEFVI DVVDLRCQSV DSDPHRITQI LTNLINNAIK FTDHGYIKVR AHSRLRETGE
LEFICEVSDT GIGIAEENQA KLFTAFSQAT SSIAAQYGGT GLGLSICKEL SELLNGKMSF
ESHKGQGSCF IFTMVLHQGE FKLMAPEALL HEMTCSVLLV NEAQQACVEA AIARLGGKLL
PGSPIRDWLN QDAPVPDVLP HVLIVEQRHS LLTDLDSLWP TLTATHKRLP RVLAFQKSAD
GNKALRNIEL EYLNNPLLFS EFMQKFGAPK ASSGVENVHP QVTPIISEEE AHRIKGARVL
VVDDNEINIE VALGILSELP LEFVRAINGQ EALTKLRECE QEGLGVHCIL MDCQMPILNG
YDCTRAIRAG EAGEAFVDTP IIAMTASAMM GERDKCIEAG MNDYITKPIV AERLQEKVTD
WLISVCEFGD LPTLVEAAPH EEIQVKDEDY VWNRQLALSR LMNNEVLFAE ICQMYHDTSP
AQVGELEEAI AAKDYEKVRQ LSHGLKGLSS SIGAIQLQEQ FLSLEMEAKM KNCDKLNLLF
GVIKPCYAKL MERLQETLEP KDEVQNASAQ T
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