Gene Shew_0975 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0975 
Symbol 
ID4921926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1120053 
End bp1120958 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content53% 
IMG OID640162507 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001093105 
Protein GI127511908 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAGT CATTGAAGTT TCGTTTGCCC AAGGGGCAGT GCTGGACGAT AGGCGTGCCC 
TATTTCTGGC TGCTGATGTT CTTTGCCTTG CCGTTTGCCA TCGTATTGAA GATCAGTCTG
TCGACCCCGG CCGTGGCGAT TCCGCCCTAT GAGGCCTTGT ATCAATATGC CGATGAGTCG
CTGCAGATCA TGCTCAATCT GGGCAACTAT ATTTTGATCT TCGAAGATCA TCTCTATATC
AATGCCTACC TGGGCTCGCT CAAGATGGCC TGTGTTACCA CCATCGGCTG TCTGCTTATC
GGTTACCCCA TGGCCTATGC CATTGCCAGG GCGCCTAAGC AGCATCAGAC AGTGCTGATC
CTCTTGGTGA TGTTGCCATC CTGGACTTCG TTCCTTATCC GGGTGTATGC CTGGATGGGC
ATCTTGAGTA ACAACGGGGT GATCAATAAC CTGCTGATGT GGCTGGGGGT GATCTCCGAG
CCGATTCAGA TGCTTAACAC TAATTTCGCC GTCTATATCG GTATCATCTA CACCTATCTG
CCCTTTATGA TCTTGCCGCT GTACGCCAAC TTGTCGCAGC TCGATGGCAG CCTGCTCGAG
GCCGCGGCGG ATCTGGGTTC ACGTAGCCTC AACACCTTCT GGAAGGTGAC GCTGCCGCTG
TCGAAAGGCG GTGTGATTGC CGGGTCTATG CTGGTGTTTA TTCCTGTGGT CGGGGAGTTT
GTGATCCCTG AGCTATTGGG CGGTCCTGAT TCGCTCATGA TAGGTAAGGT GCTGTGGCAG
GAGTTCTTCA ACAACCGTGA TTGGCCGGTC GCTTCGTCGC TCGCCATCGT GATGTTGGCA
CTTCTGATCA TCCCTATCAC CCTATTCCAT CGTTATCAGT CCAGAAGTAT GGAGAAGACG
ATATGA
 
Protein sequence
MKKSLKFRLP KGQCWTIGVP YFWLLMFFAL PFAIVLKISL STPAVAIPPY EALYQYADES 
LQIMLNLGNY ILIFEDHLYI NAYLGSLKMA CVTTIGCLLI GYPMAYAIAR APKQHQTVLI
LLVMLPSWTS FLIRVYAWMG ILSNNGVINN LLMWLGVISE PIQMLNTNFA VYIGIIYTYL
PFMILPLYAN LSQLDGSLLE AAADLGSRSL NTFWKVTLPL SKGGVIAGSM LVFIPVVGEF
VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLA LLIIPITLFH RYQSRSMEKT
I